Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00189 ATGAAACCTCTCTCTAAGCTCTTAAACAAGCTTTGTGGGAAAATGATAATGCTATTAGCATCCCTTCTAATAGAGCTTATCATTCTCATTCAGAAGCTAAGGGAATCACGTCCCATCAGCACCCGCCAATACATCAAACTCATCGAGAAGAAGAACCCCACAATTTGCTACACCAAAAGATTTAACTTGAAGGCAGAGCACGCTACAGAGTGCAGGGTATGCTTGTCCGAATTCGAGCAAGGGGAGAAGCTGAGGAAGCTCAAATGCCAACACACGTTTCATAGGGATTGTTTGGACAAGTGGTTGCAACAGTACTGGGCTACGTGCCCACTTTGTCGGAAACAGGTGTTGCCTGATGATGTTGTGTTCAAGCACCGTCAGCATCAGAATCAACCAGAGGCTGCTTCTAATGGGAATCATGACAATCTTCTCTATCTTTTTTCAGCATTTCGTGGTGGCAACACTTAA 468 0.4444 MKPLSKLLNKLCGKMIMLLASLLIELIILIQKLRESRPISTRQYIKLIEKKNPTICYTKRFNLKAEHATECRVCLSEFEQGEKLRKLKCQHTFHRDCLDKWLQQYWATCPLCRKQVLPDDVVFKHRQHQNQPEAASNGNHDNLLYLFSAFRGGNT 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00189 155 SUPERFAMILY RING/U-box 59 119 - -
Gma18g00189 155 Pfam Ring finger domain 70 113 IPR001841 -
Gma18g00189 155 CDD mRING-H2-C3H2C2D_ZSWM2 70 113 - -
Gma18g00189 155 SMART ring_2 71 112 IPR001841 -
Gma18g00189 155 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 155 - -
Gma18g00189 155 PANTHER - 1 155 - -
Gma18g00189 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 118 IPR013083 -
Gma18g00189 155 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00189 Gma-Chr18 1525004 1526040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00189 57 124 C3H Transcription Factor Family AT1G15100 44.118 5.43e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00189 K16282 - gmx:102668078 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00189 18 1525004 1526040 Gma11g02386 11 39239307 39240304 GST
Gma05g01798 05 39590230 39590706 Gma18g00189 18 1525004 1526040 PCT
Gma08g01289 08 10936180 10936650 Gma18g00189 18 1525004 1526040 PCT