Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00165 ATGGGAGGCAATTCACCAGAGAGGAAACCTGGTTGTGGCTTGATGACAGCAGTATTTGGGCGAAATAATCCATGGTCACGAAAATCAGTCTCTGCAGGTTCTTCTCCCGTAGCCAACAATTTTGAAAAACCACCAAACATTCAAGATTCAAAACGGAGACATAGAGGCTCTAATGATTTTGTTTCAATTAGAGAATCTTCATATAACAATGATGTTACAAACTACTCATCTTGTTATTCTGTCTCCAATCCTCAAAAGCCAACCCATGTTGTAAGCCAAAGGAAGCCACAAAATCGTAATGAAACAATGGGAAGAGGCCCTTCACCTTCACCTACTCAGGGCTATGTCAACCAAGGCAAAAGGGTACCAAAAGAAGCTGTTGGAATCTCTGGTGAACTTGAAAGCATGATCAATGAACACCTAAAGTCCAAAGGAAGTAGTACCCTTGGCAATTTAGGTAACCTTAGGCAAGGAGCAGGACCAAATTACAATGCTTACAGTGAAATGGATTACTGTGTTAGTAATAATGTTGCTAGTGGAGGATACACAAATCAAACCATGGGACGTGAATACGATAAAATTAGTTATGGCAAAGAAGCTAAACCAAGCAAGGAACAATCAGGTTCACTGTGTAGGGCTGTGTCTACTCGAATGGATCCCGAACAATTGAAGATAATGGGCAATGAGGATTACAAGAATGGAAGGTTTGCAGAGGCATTGGCTTTGTATGATGCCGCCATCGCAATTGACCCGAATAAGGCTTCTTATAGGAGCAACAGAAGTGCTGCATTAACTGCTCTTGGTAGGCTTTTGGAGGCTGTTTTTGAATGTAGAGAAGCTATTCGAATTGAGTCTCATTACCAAAGAGCCCATCATCGGTTGGGAAATTTGCACTTAAGATTAGGAGAAACAGATAAAGCTTTGTATCATTATAAACAAGCAGGACCAGATGCTGATCCAGATGAGATTGCTAAAGCAAAGACTCTCCAAGTATATTTAAACAAATGCACCGAGGCTCGTAGGTTCGGTGATTGGATCACACTTATAACCACAACCAACAATGCTATATCATCTGGTGCAGACTCTGCTCCACAAATATATGCATTACAAGCCGAAGCCTTGCTAAAACTTCGTAGACATCAAGATGCAGACAAAGTAATGTCAAGGTGCCCTAAATTTGATGTTGATGAGTGTACCAAGTTCTTTGGACCTATTGGTAATGCAAATTTGTTGGTGACACAGGCTCAAGTTGATTTAGTTGCTGGCAGATTTGAAGATGCTTTGGAGGCAGCACAAAAAGCAACTAGGTTGGATTCTAATAGTAAGGAGGCAAATAAGGTGATGAGAAAGGCTCGAGCTGTCACAAGTGCTCGTGCAAAGGGAAATGAGCTTTTCAAGGAATCAAAATTTCATGAGGCTTGCATTGCCTATGGAGAAGGCCTTGATTATGATCCATACAACTCCGTTTTACTATGCAACAGAGCTGCTTGTAGATCAAAACTAGGCCAATTTGATAAAGCAATAGATGATTGCAATACTGCCCTTAACTTACGCCCATCTTACAGCAAGGCCAGGTTGAGAAGAGCCAATTGTAATGCTAAGTTGGAAAGATGGGAAGCTTCAATTCAGGACTATGAAATTTTATTAAAAGAGACACCAGAAGATGAGGAAGTAAAGCGAGCATTGCTGGAGGCCCAAGCACAGCTTCAAAAACAGGCAAAGTGA 1725 0.4128 MGGNSPERKPGCGLMTAVFGRNNPWSRKSVSAGSSPVANNFEKPPNIQDSKRRHRGSNDFVSIRESSYNNDVTNYSSCYSVSNPQKPTHVVSQRKPQNRNETMGRGPSPSPTQGYVNQGKRVPKEAVGISGELESMINEHLKSKGSSTLGNLGNLRQGAGPNYNAYSEMDYCVSNNVASGGYTNQTMGREYDKISYGKEAKPSKEQSGSLCRAVSTRMDPEQLKIMGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNRSAALTALGRLLEAVFECREAIRIESHYQRAHHRLGNLHLRLGETDKALYHYKQAGPDADPDEIAKAKTLQVYLNKCTEARRFGDWITLITTTNNAISSGADSAPQIYALQAEALLKLRRHQDADKVMSRCPKFDVDECTKFFGPIGNANLLVTQAQVDLVAGRFEDALEAAQKATRLDSNSKEANKVMRKARAVTSARAKGNELFKESKFHEACIAYGEGLDYDPYNSVLLCNRAACRSKLGQFDKAIDDCNTALNLRPSYSKARLRRANCNAKLERWEASIQDYEILLKETPEDEEVKRALLEAQAQLQKQAK 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00165 574 Coils Coil 528 548 - -
Gma18g00165 574 MobiDBLite consensus disorder prediction 81 117 - -
Gma18g00165 574 Pfam TPR repeat 227 268 - -
Gma18g00165 574 Pfam Tetratricopeptide repeat 490 521 IPR001440 GO:0005515
Gma18g00165 574 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Gma18g00165 574 PANTHER OS01G0616333 PROTEIN 5 573 - -
Gma18g00165 574 SUPERFAMILY TPR-like 455 566 IPR011990 GO:0005515
Gma18g00165 574 Gene3D Tetratricopeptide repeat domain 218 574 IPR011990 GO:0005515
Gma18g00165 574 MobiDBLite consensus disorder prediction 81 121 - -
Gma18g00165 574 MobiDBLite consensus disorder prediction 23 57 - -
Gma18g00165 574 Pfam Tetratricopeptide repeat 290 320 IPR019734 GO:0005515
Gma18g00165 574 SMART tpr_5 220 253 IPR019734 GO:0005515
Gma18g00165 574 SMART tpr_5 488 521 IPR019734 GO:0005515
Gma18g00165 574 SMART tpr_5 254 287 IPR019734 GO:0005515
Gma18g00165 574 SMART tpr_5 408 441 IPR019734 GO:0005515
Gma18g00165 574 SMART tpr_5 288 322 IPR019734 GO:0005515
Gma18g00165 574 SMART tpr_5 522 555 IPR019734 GO:0005515
Gma18g00165 574 SMART tpr_5 454 487 IPR019734 GO:0005515
Gma18g00165 574 MobiDBLite consensus disorder prediction 23 45 - -
Gma18g00165 574 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 573 IPR044534 -
Gma18g00165 574 SUPERFAMILY TPR-like 220 443 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00165 Gma-Chr18 1319186 1321628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00165 221 295 U-box Gene Family AT3G07370 34.667 7.24e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00165 - - gmx:100811282 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00165 18 1319186 1321628 Gma11g02411 11 39487979 39490360 GST