Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00153 ATGTCCAATTCTATCTCCGACCCGACCCGAATAATTCACTCTCAGGATCCGAATACCACCGCGGACCCTCAGGTTCCGCTTCGGAACCTTTCCCAGGTTCGGAACAGAATGGATTCTCTACAACACTTCCTATCTCAATCCATCAATACCAACACTCCCCTCACCGTCGATCAAATCGCCATGGTCTCCAGCCAGATCCTCTCCTCCATCCACCAAGTCATCGTCAACGGCGCCGCCCTCGTCTCTTACTCTCAGAATTCCATCGCCGCCGGAGCACCGGATCCACCGCCGTATCCGAAGAAGCCGAAGCCGGAACCTTCAGTTGCCGATAAAGCGAAGCAAACACTCGATTCCAAACTCGAGCCTCTCGAAGGCGACGACAGCGAAATCGTGGAGCTCGACGCCGTCGAAATCCTCGCGGAGCACATGCACTTTTGCGAGATCTGCGGGAAAGGCTTCCGGCGCGACGCGAACCTCCGCATGCACATGCGCGCGCACGGAGAACAGTTCAAGACGGCGGAGGCGCTGGCGAAGCCTTCGGAGAAAGCCTCGTGGCTGCGTGCGACGCGGTTCTCGTGTCCGTTCGTAGGCTGCAACCGGAACAAGCTCCACCGGCGGTTCCGGCCGCTGAAATCGGTGATTTGCGTGAAGAACCACTTCAAGCGAAGCCACTGCCCGAAGATGTACACGTGCGAGCGGTGTCGCAAGAAGCACTTCTCGGTGCTCTCGGATTTGAGGAGCCACTTGAAGCATTGCGGAGGAGAGGCCAGGTGGAAGTGCACGTGCGGGACCACGTTCTCAAGGAAAGACAAGTTGTTTGGCCACATTGCGCTGTTTGAGGGCCACGCGCCTGCGCTCGCGTGTGACGAAGAGGGTAAAGGGAAACAAATGGTGGAGGACGACGAAGATCCAATGTTGATGAGTGAAAGTGGATTTGAATTGGATGATTGTTTTTTGGATCAAGAGTTTCCCGAAGGCTTCTTTGATGATTTTGGGTCCATTGATGACTACTGTTAA 1017 0.5546 MSNSISDPTRIIHSQDPNTTADPQVPLRNLSQVRNRMDSLQHFLSQSINTNTPLTVDQIAMVSSQILSSIHQVIVNGAALVSYSQNSIAAGAPDPPPYPKKPKPEPSVADKAKQTLDSKLEPLEGDDSEIVELDAVEILAEHMHFCEICGKGFRRDANLRMHMRAHGEQFKTAEALAKPSEKASWLRATRFSCPFVGCNRNKLHRRFRPLKSVICVKNHFKRSHCPKMYTCERCRKKHFSVLSDLRSHLKHCGGEARWKCTCGTTFSRKDKLFGHIALFEGHAPALACDEEGKGKQMVEDDEDPMLMSESGFELDDCFLDQEFPEGFFDDFGSIDDYC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00153 338 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 14 338 - -
Gma18g00153 338 SUPERFAMILY beta-beta-alpha zinc fingers 141 166 IPR036236 -
Gma18g00153 338 MobiDBLite consensus disorder prediction 1 25 - -
Gma18g00153 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Gma18g00153 338 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 14 338 IPR044300 GO:0010044|GO:0010447
Gma18g00153 338 Pfam Zinc finger, C2H2 type 145 166 IPR013087 -
Gma18g00153 338 Gene3D Classic Zinc Finger 227 278 - -
Gma18g00153 338 SUPERFAMILY beta-beta-alpha zinc fingers 239 293 IPR036236 -
Gma18g00153 338 MobiDBLite consensus disorder prediction 90 113 - -
Gma18g00153 338 Gene3D Classic Zinc Finger 143 179 - -
Gma18g00153 338 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Gma18g00153 338 SMART c2h2final6 191 224 IPR013087 -
Gma18g00153 338 SMART c2h2final6 229 251 IPR013087 -
Gma18g00153 338 SMART c2h2final6 144 166 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00153 Gma-Chr18 1215105 1216373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00153 129 290 C2H2 Transcription Factor Family AT1G34370 61.446 4.25e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma18g00153 zf-C2H2 0.00023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00153 - - gmx:100796506 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00153 18 1215105 1216373 Gma11g02422 11 39590675 39591966 GST