Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00149 ATGGATTTGGCATCTGTTCTTTTGCTATTGACTAGCTTATGCTCTTCTTCTGCACTGCATGAGCTTGATTCACAAGAAGATGCATTGTATGCTTTGAAGGTATCATTGAATGTTTCTGCCAACCAGCTTACAAACTGGAATAAAAATCTAGTAAACCCTTGTACTTGGTCCAATGTTGAATGTGACCAGAATAGCAACGTTGTTCGAATTTCACTAGAATTTATGGGATTCACAGGATCGTTGACACCTAGAATTGGATCTCTAAAAAGTCTTACAATTCTTTCTTTGCAAGGGAATAACATTACTGGTGACATACCAAAAGAATTTGGAAATCTTACAAACTTGGTCAGATTGGATTTGGAAAGCAACAAATTAACTGGTGAAATACCATATTCACTTGGTAATCTTAAAAGGCTTCAATTCTTGACATTGAGTCAAAACAATCTCTATGGGACTATTCCAGAATCACTTGCCAGTCTCCCAAGCTTGATCAATGTTATGCTAGATTCAAATGATCTTAGCGGGCAGATTCCAGAGCAGTTATTCAGCATTCCTATGTACAATTTCACTGGAAATAATTTGAATTGTGGTGTGAATTACCATCATCTTTGCACATCTGATAATGCATATCAAGATTCGTCACATAAAACAAAAATAGGCCTCATAGCTGGGACAGTTACAGGTTTAGTTGTTATTCTTTTTCTTGGTGGCCTGCTGTTCTTCTGGTACAAGGGGTGCAAGCGTGAAGTTTATGTAGATGTTCCAGGTGAAGTCGATCGCCGAATTACATTTGGTCAAATAAAAAGATTTTCCTGGAAAGAACTGCAGATAGCTACAGACAACTTCAGCGAGAAAAATATTTTAGGACAGGGAGGTTTTGGAAAGGTTTATAAAGGTATTCTAGCAGATGGCACCAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGCGGGTGATGCAGCTTTCCAGCGTGAAGTGGAGTTGATAAGCATAGCTGTCCATAGGAATCTGTTACGGCTCATTGGTTTTTGTACTACTTCAACTGAACGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGTTTACGAGAACTCAAACGTGGGGAACCCGTTttagattggcctaccagaaaacgagtggctctaggaactgcccgtggcctagaatatcttcacgagcaatgcaatcctaggattattcatagggatgtgaaggcagctaatatattacttgatggagattttgaagcagttgtcggtgactttggtttggcaaaattagttgaTATTCGACATACTAATGTGACAACTCAAGTTCGTGGGACAATGGGTCATATAGCTCCAGAATACTTGTCCACTGGAAAATCTTCAGAAAGGACAGATGTTTTTGGTTATGGGATTATGCTTATGGAGCTTGTAACAGGTCAGCGTGCAATTGACTTTTCACGTCTGGAAGAGGAAGATGACGTCTTATTGCTTGACCATGTTAAGAAACTGCAGCGGGAGAAAAGACTAGAGACTATTGTTGATTGCAACCTTAATAAAAATTACAACATAGAAGATGTTGAAGTAATTGTACAAATTGCATTACTCTGCACACAAGCATCACCCGAGGATCGTCCAGCAATGTCAGAGGTTGTAAGAATGTTAGAGGGAGAAGGGCTAGCTGAAAGATGGGAGGAATGGCAGCATGTGGAGGTCAATACAAGGCAAGATTATGAGAGACTGCAAAGAAGAATGAACTGGGGAGAAGATTCGGTTTATAATAACCAAGATGCAGTTGAGTTATCGGGTGGAAGATGA 1821 0.3575 MDLASVLLLLTSLCSSSALHELDSQEDALYALKVSLNVSANQLTNWNKNLVNPCTWSNVECDQNSNVVRISLEFMGFTGSLTPRIGSLKSLTILSLQGNNITGDIPKEFGNLTNLVRLDLESNKLTGEIPYSLGNLKRLQFLTLSQNNLYGTIPESLASLPSLINVMLDSNDLSGQIPEQLFSIPMYNFTGNNLNCGVNYHHLCTSDNAYQDSSHKTKIGLIAGTVTGLVVILFLGGLLFFWYKGCKREVYVDVPGEVDRRITFGQIKRFSWKELQIATDNFSEKNILGQGGFGKVYKGILADGTKVAVKRLTDYESPAGDAAFQREVELISIAVHRNLLRLIGFCTTSTERLLVYPFMQNLSVAYRLRELKRGEPVLDWPTRKRVALGTARGLEYLHEQCNPRIIHRDVKAANILLDGDFEAVVGDFGLAKLVDIRHTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLMELVTGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLETIVDCNLNKNYNIEDVEVIVQIALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVNTRQDYERLQRRMNWGEDSVYNNQDAVELSGGR 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00149 606 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Gma18g00149 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Gma18g00149 606 Gene3D Transferase(Phosphotransferase) domain 1 359 576 - -
Gma18g00149 606 Pfam Protein kinase domain 283 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00149 606 Gene3D Phosphorylase Kinase; domain 1 251 358 - -
Gma18g00149 606 SUPERFAMILY Protein kinase-like (PK-like) 261 557 IPR011009 -
Gma18g00149 606 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Gma18g00149 606 PANTHER LRR RECEPTOR-LIKE KINASE 2 606 - -
Gma18g00149 606 Gene3D Ribonuclease Inhibitor 22 205 IPR032675 -
Gma18g00149 606 ProSiteProfiles Protein kinase domain profile. 282 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00149 606 SUPERFAMILY L domain-like 24 195 - -
Gma18g00149 606 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 606 - -
Gma18g00149 606 SMART serkin_6 282 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00149 606 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00149 Gma-Chr18 1190519 1197464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00149 1 606 Receptor kinase-like Gene Family AT5G10290 71.311 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gma18g00149 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00149 - - gmx:100813228 1171.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00149 18 1190519 1197464 Gma11g02425 11 39610141 39618563 GST
Gma18g00149 18 1190519 1197464 Gma05g01448 05 36298030 36305255 PCT
Gma18g00149 18 1190519 1197464 Gma08g00929 08 7830095 7835619 PCT