Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00133 ATGGGACTTGTTTTTACCAAATTGGCATGTGCATTCCTACTATGCTACTATCTCATAACTTCTGAGGTATATTCAGTGGAGGGCTTGCTTGACGGTTCCAAAGCGAGAGATGTGAACTTAGGAGGGTGGCTGGTTATCGAAGGTTGGATCAAGCCTTCACTCTTTGGTGGCACTGCCAATGGAGACATGCTTCATGGGACGTCACAGGTTCAATTTAAGTCAGGGACGTTGCAGAAGTATGTGTCTGCTGAGAATGGGGGAGAAATGAATAACTTGACAATTTGTGTGTTTATAATTGTCATAGCTAGCACAGCTTGTGTAATTATGTTTCTCATCACGTTGTCCAAAATCCTAAGTTACTATTATGCAAGGAGATATAACGTTAGTAGAAGTAACCCACCAATATTATTTGACATTCGTGGAGATTTTCCCTTTTCTGATGATGAGGAACAAGAACAAGCCATTAGGCACCCCATATGGTTCATCCCCACAGAGGGTCTCCAACAATCAATCATAGACTCCATCACAGTCTGCAAATACAGAAAAGATGAAGGGTTAGCTAAAGAAACTTTAACTGAGTGTCTTGTTTGCCTTGGTGAGTTTCAACAAGAAGAGAGTCTCAGAGTGTTGCCAAAGTGTAACCACGCTTTTCACATCTCTTGCATTGATACTTGGTTGAGATCACATAAAAGTTGTCCCTTGTGCCGTGCCCCTATTGTTCTTGATGCTGCTAGTCTGTGTGATATCAACCAAGACATAGAAGAAAGTATTTGA 774 0.4147 MGLVFTKLACAFLLCYYLITSEVYSVEGLLDGSKARDVNLGGWLVIEGWIKPSLFGGTANGDMLHGTSQVQFKSGTLQKYVSAENGGEMNNLTICVFIIVIASTACVIMFLITLSKILSYYYARRYNVSRSNPPILFDIRGDFPFSDDEEQEQAIRHPIWFIPTEGLQQSIIDSITVCKYRKDEGLAKETLTECLVCLGEFQQEESLRVLPKCNHAFHISCIDTWLRSHKSCPLCRAPIVLDAASLCDINQDIEESI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00133 257 ProSiteProfiles Zinc finger RING-type profile. 194 236 IPR001841 -
Gma18g00133 257 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 74 245 IPR044675 -
Gma18g00133 257 SUPERFAMILY (Trans)glycosidases 36 67 IPR017853 -
Gma18g00133 257 SUPERFAMILY RING/U-box 193 242 - -
Gma18g00133 257 Gene3D Glycosidases 31 89 - -
Gma18g00133 257 CDD RING-H2_PA-TM-RING 193 236 - -
Gma18g00133 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 240 IPR013083 -
Gma18g00133 257 PANTHER RING-H2 FINGER PROTEIN ATL54 74 245 - -
Gma18g00133 257 Pfam Ring finger domain 193 236 IPR001841 -
Gma18g00133 257 SMART ring_2 194 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00133 Gma-Chr18 1030718 1031759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00133 98 241 C3H Transcription Factor Family AT1G72220 45.139 8.67e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00133 - - gmx:102662435 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00133 18 1030718 1031759 Gma11g02441 11 39763466 39767452 GST