Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00130 ATGAAGGTGAGCCAATATATGCTCCTGGTGGTCCTAGTTTGGCATTCTTCATTATGTGCGAATGCACAGTGGAATAACCCAATAAACTACTCTCCATTCGACGAGACAAACAAAGGTGGAAACTACTCCAAGGTCACATGGAGTGTGTCGCTGTCATGTGTCTTCGTTAGCATCCTGGTGTTTATTTTGTTTAAGCTCCGCGCGTGTTGTTGTTGTTGTTATTCTTCTTCTTCTTCCCAACGCCATAACACAAAGCTCGTGGCAGCCACAGAAGCTATTGAAAAGTGCCCCATCTTTGAATACTCGACGGCGAAGGAGCTTAAAGTGGGGAATGGGGCAGAGGAGTGCTCGGTGTGCTTGGTCGAGTTCGAAGACTCCGACACCATAAAGATGCTCCCAAAATGCCAACACGTTTTCCACCAGAATTGCATCGATACATGGTTACCCTCTCGCATGACCTGTCCCATTTGTCGCCAGAAACTCACGTCTCAGGATACCGTAATCGACATTAATGATGATGATGTCGTCCCAATGGAACAACTAGAACATGATATTGGTACAGAGATTACAGAGTCAGAGGTGGCAGTAACTGATGAAACTGACACTGGCACTGTTGTGGAACAGGTTTTGGTTTGA 636 0.4607 MKVSQYMLLVVLVWHSSLCANAQWNNPINYSPFDETNKGGNYSKVTWSVSLSCVFVSILVFILFKLRACCCCCYSSSSSQRHNTKLVAATEAIEKCPIFEYSTAKELKVGNGAEECSVCLVEFEDSDTIKMLPKCQHVFHQNCIDTWLPSRMTCPICRQKLTSQDTVIDINDDDVVPMEQLEHDIGTEITESEVAVTDETDTGTVVEQVLV 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00130 211 PANTHER RING FINGER DOMAIN-CONTAINING 8 191 - -
Gma18g00130 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 167 IPR013083 -
Gma18g00130 211 Pfam Ring finger domain 115 158 IPR001841 -
Gma18g00130 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 8 191 - -
Gma18g00130 211 SUPERFAMILY RING/U-box 115 167 - -
Gma18g00130 211 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Gma18g00130 211 CDD RING-H2_PA-TM-RING 115 158 - -
Gma18g00130 211 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00130 Gma-Chr18 1014811 1015446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00130 1 164 Rapid Response to Elicitors AT3G05200 32.955 1.39e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00130 K10664 - gmx:102667227 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00130 18 1014811 1015446 Gma11g02443 11 39781941 39782618 GST