Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00111 ATGGCATTTTCATTCACATTTATGTTCCAGTTCTTGCTTCTTGCCCCATCTGTGATCTATGCTTCTCCAGTTCAAGACCCTGAATTAGTGATCCAGGAAGTTCAAAAGAGCATCAATGGCTCAAGGAGAAACTTGGGGTATCTTTCTTGTGGAACGGGGAACCCCATTGATGATTGTTGGAGGTGCGACCCCAACTGGGAAAGGAACCGAAAGCGTCTAGCTAGTTGTGCAATTGGGTTTGGTAAGCATGCCATTGGTGGAAAAGATGGGAAAATATATGTGGTGACTGACCCTAGTGATAACCCTGTGAACCCCAAGCCAGGAACATTGAGACATGGTGTTATTCAACAAGAGCCTTTGTGGATCATTTTCAAGCATGACATGGTGATCAAGCTACACAAGGATCTCTTAGTTAATTCTTACAAAACCATTGATGGAAGAGGAGCAACCATCCACATTGCTGGAGGAGGGCCATGCATTAGAGTGCAAAAGAAGACCAATATCATAATTCATGGCATACACATCCATGATTGCAAAAGGGGTGGCGGTGGATATGTGAGTGACTCTCCTAACCATCGTAGCTGGAGTGCAAGATCAGACGGTGACGGGATCACAATCTTTGGTGGGAGCCATGTTTGGGTGGACCATTGCTCCTTGTCAAACTGTTTTGATGGCCTCATTGATGTTGTTCATGGCTCAACGGCCATCACCATTTCCAACAATAACATGACACACCATAACAAGGTCATGCTCTTGGGCCACAGTGATTCCTATAAAGCTGACAAGAACATGCAAGTCACCATTGCCTTCAACCATTTTGGAGTAGGACTAGGGGGAAGAATGCCGAGGCAGCAGCTTGATTTAATTTCCTACACAAATTTGCAGATGCAGGTGACCAAACATTTTAAATCATCAAAGAGTGAGTGGAGGAAATGGAATTGGAGGTCTGAAGGAGATCTAATGCTGAATGGTGCCTTCTTCACAGCTTCCGGGGCGGGGGCAACTGCTAGGTATGATAAAGCGTCAAGCATGGCAGCACGACCACCTATGCTTGGGGTTTCCATGACAGCAGGGGCTGGAGCACTTAGATGCAACAAGGGCAATCTATGCCACTAG 1116 0.4606 MAFSFTFMFQFLLLAPSVIYASPVQDPELVIQEVQKSINGSRRNLGYLSCGTGNPIDDCWRCDPNWERNRKRLASCAIGFGKHAIGGKDGKIYVVTDPSDNPVNPKPGTLRHGVIQQEPLWIIFKHDMVIKLHKDLLVNSYKTIDGRGATIHIAGGGPCIRVQKKTNIIIHGIHIHDCKRGGGGYVSDSPNHRSWSARSDGDGITIFGGSHVWVDHCSLSNCFDGLIDVVHGSTAITISNNNMTHHNKVMLLGHSDSYKADKNMQVTIAFNHFGVGLGGRMPRQQLDLISYTNLQMQVTKHFKSSKSEWRKWNWRSEGDLMLNGAFFTASGAGATARYDKASSMAARPPMLGVSMTAGAGALRCNKGNLCH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00111 371 Gene3D - 53 363 IPR012334 -
Gma18g00111 371 SMART amb_all 127 333 IPR002022 -
Gma18g00111 371 PANTHER PECTATE LYASE 18-RELATED 296 367 IPR045032 GO:0030570
Gma18g00111 371 PANTHER PECTATE LYASE 18-RELATED 3 286 IPR045032 GO:0030570
Gma18g00111 371 SUPERFAMILY Pectin lyase-like 37 364 IPR011050 -
Gma18g00111 371 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Gma18g00111 371 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Gma18g00111 371 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Gma18g00111 371 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Gma18g00111 371 Pfam Pectate lyase 137 295 IPR002022 -
Gma18g00111 371 PANTHER PECTATE LYASE 296 367 - -
Gma18g00111 371 PANTHER PECTATE LYASE 3 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00111 Gma-Chr18 888001 890297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00111 3 370 Polysaccharide Lyase AT5G63180 59.753 8.07e-167 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00111 K01728 - gmx:100803068 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00111 18 888001 890297 Gma11g02466 11 39938276 39940672 GST