Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00110 ATGGAAATTCCAATTCCAATTCCACTCTCATCTATGTTACTCTTTCTACTTCTTGTACCTTGCTGCATTTGCTCTTCCCCACTTCAAGATCCTGAACTAGTGGTCGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTAGCATTTCTTTCTTGTGGGACGGGGAACCCCATTGATGATTGTTGGAGATGTGACCCCAATTGGGAAAAGAACCGGAAGCGTCTGGCAGATTGTTCCATTGGGTTTGGTAAACATGCTGTTGGAGGAAGGGATGGAAAACTATATGTGGTGACTGACCCTGGTGATCACCCTGTGAACCCCAAGCCAGGAACACTTAGATATGGTGTGATCCAAGAGGAGCCATTGTGGATCATATTCAAACGTGACATGGTGATCAAGCTCAAGCAAGAGCTAATGATGAATTCTTTCAAGACTATTGATGGTAGAGGAGTAAGTGTGCACATTGCTGGTGGCCCTTGCATTACTATACAATATGTGACCAACATTATCATTCATGGGATTAACATCCATGACTGCAAGCAAGGAGGGAATGCCTATGTGAGGGACTCTCCTACACACTATGGGTGGAGGACTCTCTCGGATGGTGATGGAGTGTCAATCTTTGGTGGGAGTCATGTTTGGGTGGACCACTGCTCTCTCTCCAATTGCCGTGATGGGCTAATTGATGCCATCCATGGATCCACGGCCATCACCATATCCAACAATTACATGACCCACCATAACAAGGTTATGCTTTTGGGTCACAGTGACACTTTCACTAGGGACAAGAACATGCAAGTCACCATTGCCTTTAACCATTTTGGAGAAGGGCTAGTGCAGAGAATGCCAAGATGCAGGCATGGATACTTCCATGTGGTGAACAATGACTACACCCATTGGAGAATGTATGCCATAGGGGGGAGTGCTGCCCCAACTATCAATAGCCAAGGGAATAGATTTCTTGCTCCCAATGACAATACCTTCAAAGAGGTGACAAAGAGGGAGAATTCACCACAGAGCAAGTGGAAGAATTGGAATTGGAGGTCAAATGGAGATTTGATGTTAAACGGTGCGTTTTTTACGGCATCTGGAGCAGGCGCATCTTCAAGTTATGCAAGAGCATCCAGTTTGGCAGCAAAATCATCTTCACTTGTGAGTTCTATAACAGCATCAGCTGGATCACTTAGATGCAGAAAGGGTTCACGCTGCTGA 1218 0.454 MEIPIPIPLSSMLLFLLLVPCCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDPNWEKNRKRLADCSIGFGKHAVGGRDGKLYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKRENSPQSKWKNWNWRSNGDLMLNGAFFTASGAGASSSYARASSLAAKSSSLVSSITASAGSLRCRKGSRC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00110 405 Pfam Pectate lyase 140 322 IPR002022 -
Gma18g00110 405 SUPERFAMILY Pectin lyase-like 42 399 IPR011050 -
Gma18g00110 405 PANTHER PECTATE LYASE 13 402 - -
Gma18g00110 405 SMART amb_all 131 328 IPR002022 -
Gma18g00110 405 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Gma18g00110 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Gma18g00110 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Gma18g00110 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Gma18g00110 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Gma18g00110 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Gma18g00110 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Gma18g00110 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Gma18g00110 405 Gene3D - 57 398 IPR012334 -
Gma18g00110 405 PANTHER PECTATE LYASE 18-RELATED 13 402 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00110 Gma-Chr18 877923 879819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00110 10 405 Polysaccharide Lyase AT5G63180 77.396 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00110 K01728 - gmx:100782388 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00110 18 877923 879819 Gma18g00110 18 877923 879819 ECH
Gma18g00110 18 877923 879819 Gma06g01556 06 15131642 15133940 ECH
Gma18g00110 18 877923 879819 Gma04g01853 04 48634973 48637427 ECH
Gma18g00110 18 877923 879819 Gma05g00418 05 3937715 3939693 ECH
Gma18g00110 18 877923 879819 Gma17g01175 17 10273617 10275499 ECH
Gma18g00110 18 877923 879819 Gma11g02467 11 39947114 39949450 GST