Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00100 ATGTGGCAAAATCAGCCCAGCAATTCGTCTTTCAGTGATTCTGTCAAGGCTCTCCAAGATGATATACAACATGCTAATACCCTGGCATCAGCACTTCCTCGAGATTATGATGGGAACTATTTTCAGATGAAATTATCTTACAGCCCCTTTGCTCCTATTTTTTTGTTCTTGAGTGAATGGTTGGATTTTAGTTGTACAGACACTTTGCCCATGTATTTGGGCTTACTCCACATACTTATTTTCAATGTATACGCTGATGGAATGCCATCTATTTCCTCAAAAGAAAGGAAAGCAACTATAAAGGAATTTTATGCTGTCATATACCCTTCATTAAGGTTACTTCAAGGCGAGTTTAATAATGATCAAAGAAACAGTTGTGCAGAAGTGAGCAGAAAGAGGCTTGCAAAGGTTCTCAATAAAGATCTAGAGGGAGATGAAGAATGTGGCATATGCATGGAAAACGGCATGAAGATGGTTCTGCCTAATTGTGGACACTCTTTGTGCATTAGCTGCTTCCATGATTGGTATATGAGATCAGAATCATGCCCATTTTGCCGTGGAAGCCTGAAGAGGATCAGTCCTAAAGATTTATGGGTGGTAATTGGCAACAGTGATGTGGTTGACAGGATTACCATTGCAAAGGAGAATTTAAGACGTCTCTACCATTACATTGAAACTCTGCCTTCAATCATATCGGATGCACATGCATATACATTCAATTACATGCTATAA 732 0.3921 MWQNQPSNSSFSDSVKALQDDIQHANTLASALPRDYDGNYFQMKLSYSPFAPIFLFLSEWLDFSCTDTLPMYLGLLHILIFNVYADGMPSISSKERKATIKEFYAVIYPSLRLLQGEFNNDQRNSCAEVSRKRLAKVLNKDLEGDEECGICMENGMKMVLPNCGHSLCISCFHDWYMRSESCPFCRGSLKRISPKDLWVVIGNSDVVDRITIAKENLRRLYHYIETLPSIISDAHAYTFNYML 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00100 243 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Gma18g00100 243 PANTHER RING FINGER PROTEIN 41, 151 4 243 - -
Gma18g00100 243 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
Gma18g00100 243 SUPERFAMILY RING/U-box 136 191 - -
Gma18g00100 243 SMART ring_2 148 185 IPR001841 -
Gma18g00100 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 196 IPR013083 -
Gma18g00100 243 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 4 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00100 Gma-Chr18 788195 790691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00100 112 225 C3H Transcription Factor Family AT2G20030 31.250 1.88e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00100 - - gmx:100805014 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00100 18 788195 790691 Gma18g00100 18 788195 790691 ECH
Gma18g00100 18 788195 790691 Gma11g02478 11 40036487 40040304 GST