Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00079 ATGATGGTGTTGGCGAATTCTGGTACGGGGCTTAGGAAACAGGTTTTTCCCGTAGATTACGAAACAGAGATTTCGCAGCGTCTCGTAGACGCTGCTCACTACGGTGACACAGACGCTGCGTTCGAATGCATCGCGAATCCCTTGGTGGACGTTAACTTCGTCGGAACGGTGTCGTTTAAGTCCAAAACGACGGAGATCGTGCTGCAGGACGAGTCGCCTCACAGAGTTAACTCGGCGTACGAGGAGTTCAAGACCGAGCTCACTGCTCTGTTTTTGGCTGCGCACACAGGGAATTTGTCACTCCTCCGGAAGCTTCTGAATGTTGGAGCAAATGTAAATATGAGATTGTTCCGGGGCTATGCCACAACAGCATCAGTGAGAGAAGGGCATCTAAAAATATTGGAGGTCCTTATCAATGCTGGGGCGTCACAACTTGCATGCGAGGAGGCTTTAATGGAAGCAAGTTACTTGGGGAGGGCCAGGTTTGCTGAACTACTCATGCAGTCCAACATGGTTCGTCCTCAGGTAGCAGTTCATGCTCTTGTCTCTGCATGTTGCAGAGGCTTCGTTGAGGTTATTGATGTACTCATCAAGCATGGAGTGGATGCCAATGCAATCGATAGGATTTTGCTTCAATCTTCAAAACCATTTCTTCACGCTAGTGTTGATTGCAATGCATTATTCGCCGCTGTGGTCAGCAGGCAGATTAATGTAGTTGGATTACTGTTGCAGGTTGGCGTAAGGCTTGATATCAAGGTCAAACTTGGGGCCTGGTTGTGGGACACGGATACAGGAGAAGAATTTCGTGTGGGTGTTGGGCTAGCTGAGCCTTATCCAATCACATGGTGTGCTGTGGAGTATTTTGAATCCACTGGTGCTATATTGCACATGCTTCTCTGCCAGCTCTCGCCTAATAGCTTGCACACTGGGAGGAGTCTCTTGCACCATGCTATCATTTGTAACAATGAAAAAGCTGTAAATATACTTCTAAAGAATGGTGCTGATGCAGAAGTGGTAGTGCAAACCACAGAAGAAACCAATGAACACCCTATTCACATGGCTGCACGGCTCGGATCATGTAACATTCTTCAGTGCCTGATTAATGGTGGTTGTAACTTGGACTCTCAAACAAAATGTGGAGACACAGCATTGATGATCTGTGCAAGGTACAAACATGAGAAGTGCCTTGGAGTCCTAGTATCTGCAGGTGCTGATTTGGGTATGGTAAATTCATCTGGTCACTGTGCAACTTCAATTGCAAACTGTGTTCAGTGGACTAAAGTCTTCCAGAGAGCAATCTTGGATGTAATCAGAGCCGGGAAGGTTGTTAAATCAAGCAACACCTCTAGATTTTCCGCTTTGTTATTTGTAACTCGTGCAAATGATATAGAGGGTTTGAAGAAACTCATTGAAAATAATAACATCGATCTAGATGAGCAAAATGCAAATGGATTTTCAGCTGCTATGATAGCTGCTGTAGGGGGCAATGTGGAGGCTTTCAAGTTACTTCTTTATGCTGGGGCTGATGTGACTAATCTTAAAAACAAGTATGGTTTGACAGCCCTTAACCTCATAGATATTAGCCAAAATGGTGAAGTGTTCCACAAGGTGATGCTTGAATATGCACTTAAAAAGGGAGGCAATGGTTCGATTGAGGTGAATCCTCTCCACCGTGCAGCTTGCTATGGGGACATAAACATTGCTCACAACCTACTAAAAGAAGGGTATGATGTCAATGCTTTTGATGGTCAAGGATATACCCCTTTGATGTTAGCAGCAAGAGGATGCCGCGGCGAGATGTGTGAGCTTTTGATCTCTTATGGAGCTAAATGTGATATTCAGAATGAGAGGCACGAGACAGCACTTTTACTTGCAAGAGAAAATGGTGCACGAAATGATGCAGAACGCGTGATATTGGATGAGGTAGCTCGAAAACTAGTCTTGCATGGTGGTCGTGTTAAAAAACATACAAAGTGTGGTAAAGGTTCACCTCATGGTAAGTTACTAGTGATGATTGGAGCTGCTGGAATCTTACGTTGGGGGAAATCTAGTAAGAGAAACGTGATTTGTAAAGAGGCTGAGGTTGGACCAAGTGCGAAATTTCGATGGAATCGCAGGAGGAAGTTTGATGTTGATGAGCCAGGAATGTTCCATGTGGTCACTACAAAAAATAAGCAGGTACATTTTGTGTGTGAAGGTGGGGTTGAAATGGCTGAATTATGGGTAAGGGGGATTAGATTAGCAACTAGAGAAGCCATTTTTGGTCAAAGAGCTGATGAAGTTTGA 2286 0.4471 MMVLANSGTGLRKQVFPVDYETEISQRLVDAAHYGDTDAAFECIANPLVDVNFVGTVSFKSKTTEIVLQDESPHRVNSAYEEFKTELTALFLAAHTGNLSLLRKLLNVGANVNMRLFRGYATTASVREGHLKILEVLINAGASQLACEEALMEASYLGRARFAELLMQSNMVRPQVAVHALVSACCRGFVEVIDVLIKHGVDANAIDRILLQSSKPFLHASVDCNALFAAVVSRQINVVGLLLQVGVRLDIKVKLGAWLWDTDTGEEFRVGVGLAEPYPITWCAVEYFESTGAILHMLLCQLSPNSLHTGRSLLHHAIICNNEKAVNILLKNGADAEVVVQTTEETNEHPIHMAARLGSCNILQCLINGGCNLDSQTKCGDTALMICARYKHEKCLGVLVSAGADLGMVNSSGHCATSIANCVQWTKVFQRAILDVIRAGKVVKSSNTSRFSALLFVTRANDIEGLKKLIENNNIDLDEQNANGFSAAMIAAVGGNVEAFKLLLYAGADVTNLKNKYGLTALNLIDISQNGEVFHKVMLEYALKKGGNGSIEVNPLHRAACYGDINIAHNLLKEGYDVNAFDGQGYTPLMLAARGCRGEMCELLISYGAKCDIQNERHETALLLARENGARNDAERVILDEVARKLVLHGGRVKKHTKCGKGSPHGKLLVMIGAAGILRWGKSSKRNVICKEAEVGPSAKFRWNRRRKFDVDEPGMFHVVTTKNKQVHFVCEGGVEMAELWVRGIRLATREAIFGQRADEV 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00079 761 Coils Coil 463 483 - -
Gma18g00079 761 SUPERFAMILY Ankyrin repeat 309 637 IPR036770 -
Gma18g00079 761 Pfam Ankyrin repeat 310 336 IPR002110 GO:0005515
Gma18g00079 761 PANTHER ANKYRIN DOMAIN PROTEIN 9 756 - -
Gma18g00079 761 ProSiteProfiles Ankyrin repeat profile. 551 583 IPR002110 GO:0005515
Gma18g00079 761 ProSiteProfiles Ankyrin repeat region circular profile. 551 582 - -
Gma18g00079 761 Gene3D - 178 264 IPR036770 -
Gma18g00079 761 ProSiteProfiles Ankyrin repeat profile. 483 515 IPR002110 GO:0005515
Gma18g00079 761 ProSiteProfiles Ankyrin repeat region circular profile. 483 510 - -
Gma18g00079 761 ProSiteProfiles Ankyrin repeat profile. 346 378 IPR002110 GO:0005515
Gma18g00079 761 ProSiteProfiles Ankyrin repeat region circular profile. 85 115 - -
Gma18g00079 761 SUPERFAMILY Ankyrin repeat 28 256 IPR036770 -
Gma18g00079 761 ProSiteProfiles Ankyrin repeat region circular profile. 309 338 - -
Gma18g00079 761 Pfam Ankyrin repeats (3 copies) 347 408 IPR002110 GO:0005515
Gma18g00079 761 Pfam Ankyrin repeats (3 copies) 556 635 IPR002110 GO:0005515
Gma18g00079 761 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Gma18g00079 761 SMART ANK_2a 309 338 IPR002110 GO:0005515
Gma18g00079 761 SMART ANK_2a 176 205 IPR002110 GO:0005515
Gma18g00079 761 SMART ANK_2a 449 479 IPR002110 GO:0005515
Gma18g00079 761 SMART ANK_2a 483 512 IPR002110 GO:0005515
Gma18g00079 761 SMART ANK_2a 85 114 IPR002110 GO:0005515
Gma18g00079 761 SMART ANK_2a 222 251 IPR002110 GO:0005515
Gma18g00079 761 SMART ANK_2a 584 613 IPR002110 GO:0005515
Gma18g00079 761 SMART ANK_2a 346 375 IPR002110 GO:0005515
Gma18g00079 761 SMART ANK_2a 551 580 IPR002110 GO:0005515
Gma18g00079 761 SMART ANK_2a 379 408 IPR002110 GO:0005515
Gma18g00079 761 SMART ANK_2a 117 146 IPR002110 GO:0005515
Gma18g00079 761 Gene3D - 17 177 IPR036770 -
Gma18g00079 761 ProSiteProfiles Ankyrin repeat region circular profile. 584 616 - -
Gma18g00079 761 Gene3D - 434 531 IPR036770 -
Gma18g00079 761 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Gma18g00079 761 Gene3D - 303 433 IPR036770 -
Gma18g00079 761 PANTHER ANKYRIN REPEAT-CONTAINING 9 756 - -
Gma18g00079 761 Gene3D - 532 669 IPR036770 -
Gma18g00079 761 ProSiteProfiles Ankyrin repeat profile. 309 341 IPR002110 GO:0005515
Gma18g00079 761 ProSiteProfiles Ankyrin repeat profile. 379 411 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00079 Gma-Chr18 632961 637738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00079 317 535 Ion Channels AT2G25600 28.692 1.94e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00079 - - gmx:100795638 1502.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00079 18 632961 637738 Gma18g00079 18 632961 637738 ECH
Gma18g00079 18 632961 637738 Gma11g02502 11 40215061 40215390 GST