Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00077 ATGCGAATAATGGATGTTGCTGAGGTTGAAGAAAGTTTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTGTCTGCAATATACTGCAAGATATTGTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTGCTAAAATTTGAGAAGGCTAAATGTGCTCTTGGGGACAGTCTTAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGACGAAATTGTGAAAGAACTTGCAAGTACGGTATTTGCACTTGACCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAGTGACTCTAATGATAGTAATGAACTTGAATGTTTTCATCTGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAACAGCTCTTACAGAAAGAAGAGCTCTAAAAAAACTCATAGAAAGGGCTCGTGCTGAGGAAGACAAGCGGAAAGAATCAATTATTGCTTTTCTTTTACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGTGAGTTTTCTGATGACAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTCCCAGTGGTCATTGTCATGCCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGAAATCAGGGCAGATGCTCCTTCCGCCAGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGAGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTAGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCTTTATCAGACACTGAATCCACAAATTCAAGATCCGTAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAATGGGGGGAAATGCTACTGAAAGTTTTTGTGCGCAAGAGGAAGATAATGAACAGTATGTTAGTTTTCTTAAAGTCTTGACAGAAGGGAACAATTGGAAGAGGAAGTGTAAAGTGGTTGAACAGTTGAGGCTGTTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCCAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCATGAAGCGAATGCGATGGCTCTTGAAATTGGTGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAATAGAAATAAGGAAATTATGATATCAACAGGAATCTTGTCGTTGTTGGAGGAAATGATTTCAAAAACTAGTTCCTACGGTTGTGCAGTTGCCCTGTATCTGAATCTTTCTTGCCTCGATAAAGCCAAGCATATGATTGGCACAAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTGAAGCCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTGTGCCCTCAAATATTCCAAACCTCCTTTCGTCTGGCATCATGGATGGCCTACAATCCCTTCTTGTAGACCAGGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCGGTTTATCAAGCAGGAAGAGAGAAAATGATGTTGGCTCCTGGACTTATAAGTGCCTTGGCTTCCACACTAGATACCGGTGAGCCCATAGAGCAGGAACAAGCTGCTTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGTTGTCAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTGAATGGGACCTCGAGAGGAAGAGAGAAGGCTCAGAAGCTCTTGATGGTCTTCAGAGAGCAGCGACAACGAGACCATTCTCCTGTTAAGATTGATCAACCTGAATCCGAAAGTAGTGATTTGTCTATGCCTCCTCCTGACACCAAACCGCTATCTAAAACAATATCTAGAAGAAAGGTGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2307 0.4174 MRIMDVAEVEESFFAASDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALGDSLKRVEDIVPQSIGCQIDEIVKELASTVFALDPSEKQVGDDLIALLQQGRKFSDSNDSNELECFHLAATRLGITSSRTALTERRALKKLIERARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPSGHCHAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSVNSVGSCKLKGVKVVPVEESGISEQMGGNATESFCAQEEDNEQYVSFLKVLTEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALMQFLQSAVHEANAMALEIGAMALFNLAVNNNRNKEIMISTGILSLLEEMISKTSSYGCAVALYLNLSCLDKAKHMIGTSQAVQFLIQILEAKTEVQCKIDSLHALYNLSTVPSNIPNLLSSGIMDGLQSLLVDQGDCMWTEKCIAVLINLAVYQAGREKMMLAPGLISALASTLDTGEPIEQEQAASCLLILCNRSEECCQMVLQEGVIPALVSISVNGTSRGREKAQKLLMVFREQRQRDHSPVKIDQPESESSDLSMPPPDTKPLSKTISRRKVVGKAFSFLWKSKSYSVYQC 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00077 768 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Gma18g00077 768 Coils Coil 178 198 - -
Gma18g00077 768 CDD RING-Ubox_PUB 286 328 IPR045210 -
Gma18g00077 768 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Gma18g00077 768 MobiDBLite consensus disorder prediction 711 742 - -
Gma18g00077 768 SMART arm_5 457 501 IPR000225 GO:0005515
Gma18g00077 768 SMART arm_5 626 667 IPR000225 GO:0005515
Gma18g00077 768 SMART arm_5 542 583 IPR000225 GO:0005515
Gma18g00077 768 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Gma18g00077 768 SUPERFAMILY ARM repeat 432 704 IPR016024 -
Gma18g00077 768 PANTHER U BOX DOMAIN-CONTAINING 4 750 - -
Gma18g00077 768 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 750 - -
Gma18g00077 768 SUPERFAMILY RING/U-box 279 357 - -
Gma18g00077 768 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Gma18g00077 768 Gene3D - 412 610 IPR011989 -
Gma18g00077 768 Gene3D - 611 713 IPR011989 -
Gma18g00077 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 355 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00077 Gma-Chr18 619464 623262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00077 4 767 U-box Gene Family AT1G24330 66.067 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00077 - - gmx:100804344 1414.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00077 18 619464 623262 Gma18g00077 18 619464 623262 ECH
Gma18g00077 18 619464 623262 Gma11g02504 11 40222143 40227526 GST
Gma18g00077 18 619464 623262 Gma05g01477 05 36541817 36546607 PCT
Gma18g00077 18 619464 623262 Gma08g00958 08 8058855 8063131 PCT
Gma05g01477 05 36541817 36546607 Gma18g00077 18 619464 623262 PCT
Gma08g00958 08 8058855 8063131 Gma18g00077 18 619464 623262 PCT