Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00070 ATGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCTAAACGATACTTAGAGGATGTTTTGGCCCACAAACAGGCTATTCCTTTCCGACGCTTTTGTGGTGGTGTTGGGAGGACGGCCCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAGGCTGAGACTCAATTGGCAACAAGCAAGAAGAAGGGCGCTCTTCGAAGTGGTTTTGCTTCAACTTTTATTCTGCATTCCATCATCGTCCATTTTCATGATCCTAAGATGGATTGGCAAGGGCAAAAGATAGCAGAGCAGCTAATGCAGATAATGCTGCTTGCATTTACTGTGATTGCATTCGCAACAGGATACCTTATGGCTTCTTTCCAAATGATGATCCTCATATATGCTGGTGGTGTGGTTCTCACCACATTGGTGACTGTCCCTAATTGGCCCTTCTTCAACCACCATCCTCTCAAGTGGTTGGATCCAAGTGAGTTAGAAAAGCATCCAAAGCCTCAATCATCTCTGAATGTAAATTCAAAGAACAAGTCCGTTAAGAAGTAG 870 0.4575 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEAETQLATSKKKGALRSGFASTFILHSIIVHFHDPKMDWQGQKIAEQLMQIMLLAFTVIAFATGYLMASFQMMILIYAGGVVLTTLVTVPNWPFFNHHPLKWLDPSELEKHPKPQSSLNVNSKNKSVKK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00070 289 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Gma18g00070 289 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 181 - -
Gma18g00070 289 PANTHER 60S RIBOSOMAL PROTEIN L17 1 181 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gma18g00070 289 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Gma18g00070 289 MobiDBLite consensus disorder prediction 268 289 - -
Gma18g00070 289 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gma18g00070 289 Gene3D Ribosomal protein L22/L17 1 178 IPR036394 GO:0003735|GO:0005840|GO:0006412
Gma18g00070 289 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gma18g00070 289 Pfam Microsomal signal peptidase 12 kDa subunit (SPC12) 197 266 IPR009542 GO:0005787|GO:0006465|GO:0016021
Gma18g00070 289 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gma18g00070 289 MobiDBLite consensus disorder prediction 272 289 - -
Gma18g00070 289 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00070 Gma-Chr18 581012 585034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00070 1 174 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.230 1.17e-115 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00070 K02880 - gmx:100305777 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00070 18 581012 585034 Gma18g00070 18 581012 585034 ECH
Gma18g00070 18 581012 585034 Gma11g02510 11 40262048 40264697 GST
Gma18g00070 18 581012 585034 Gma05g01479 05 36601262 36602309 PCT
Gma05g01479 05 36601262 36602309 Gma18g00070 18 581012 585034 PCT