Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00049 ATGCCACCTGGTTTGGAGTACAATATCGATGATCTGTTTCAAGAAGCTAAGAGGAGATGGCTCAAGCCTGTGGAAGTGCTTTACATTTTACGGAATCACGACCAGTGCGAGTTCACCCACCAGCCCCCTCATCAGCCAGCTGGTGGATCCCTGCTTCTGTTTAATCGAAGAATCATGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGGAAGAAAAAAGATGGCAAAACTGTGGGAGAAGCGCATGAACGGCTTAAGGTTGGCAATGTTGAAATCCTAAACTGTTACTATGCACATGGAGAGGAGAACCGTACTTTTCAGAGACGGAGCTATTGGATGTTGGAGCCGGAATATGACCATATTGTTCTTGTGCATTATAGAGAAACTAGTGAGGGGAAATCCAAATCTGAACATGTCACACAATTGTCATCAGGTTCCTCTCCTGTTTTTAGTCAGAGTCATAGCTCGTATACTACTCACAACCCAGGAACAGCATCCATGTTTGGTGATTCATGTGAACCTAATCAGAAATTTTCTAGTTCTGGGTCTTTAGAAGATACATCCGAAGCACAAGCCTTGCGCCAATTGGAAGAACAGCTGAGTTTGAATGAGGACATTTTCAATGAAATTGCACTTGATTTAATCCCAGGTCAAGATCAAAGGGTGGTTTATAAGCAAGATAACTCTGTAGCTTTGTCTGGACCAAATGATCCAGGACAACCTTGTGATGGATATAATGGAAGAGAAGatgacagtggtacatattatcatgactttcttgatgattgtcctggtggaaatgaaaaaactatatactggactgaagtgctggaatcgtgtaagcccttatctgtgaccaaattaccagatcaacatgcatatgacgcgattgaaaatggaaagtcattattttcttcaggaagaggaatgattgccaaccgggaaaaaaatcagtggctaaactccaacagtaataatgttgaaaactctgttttcttgtttcctcaagacattggagtcaaatttcctccatattctatggtagaaactccaggaactaactatgactactatgaaacctgttttgatcaattccaaaatcaagaacctctgggtgtagattcaagcttcactgttgtgcagaaacagaaatttacaattagggcagtttccccagaatactgttatgccactgagactacaaaggtgatcattattgggtcatttctatgccatgactcggattctacctgggcctgtatgtttggtgatgttgaagttcctgcagagataattcaggatggtgtaatctgttgtgaagctccatCTTATCTTCTTGGGAAGGTTAATTTGTGTGTTACTTCAGGAAATAGGGTGCCATGCAGTGAAGTGAGGGGGTTTGAGTTTCGAAATAAGACTACTAGTTGCACTCGCTGTAATTCATTGGAAACAGAAGGCAGCAAAAGTCTAGAAGATCTGTTATTACTTGTTCGATTTGCAGAGATGCTCCTTTCTGCTTCAACTACAAAGGATGACAGAATAGAATCTGGAAGTTATCTTTCAACAGAACAGAAAGATGATGATGATTCATGGAGCCATATTATTATAGACACTCTTCTAGATGGCACCAGAACATCATCTGATACTGTTAACTGGCTTCTTGAAGAGCTGCTGAAGGATAAGTTGCAGCTCTGGCTTTCTAACCGAAGAGATGAAGGGACAGGCTGTTCTTTTTCCAGGAAAGAACAGGGGATAATACACATGATTTCTGGGTTGGGTTTTGAGTGGGCCTTGAGCCCCATTCTTAGTTGTGGTGTGAATATAAATTTCCGTGACATCAATGGGTGGACCGCTCTTCATTGGGCTGCTAGGTTTGGGAGGGAAAAAATGGTTGCTTCGCTTATAGCTTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTTCACAAGATCCAACAGGTAAAACTGCTGCATCTATTGCAGCTAGCCATGGCCATAAGGGACTGGCAGGTTATCTTTCAGAGGTAGACCTAACAAGCCATCTGTCATCCCTCACATTGGAAGAGAGTGAGCTTTCTAAAGGATCTTCTGAGCTTGAAGCCGAGTTAACTGTCAGTAGTGTCTCTAAAGAAAATCTTGTGGCCAGTGAGGATCAGGTTTCACTACAAGCTTTCCTGGATGCTGTTAGAAATGCAGCTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTGCACATTCTTTTAGAAAACGGAAAGAAAGAGAAGCTGCTGCTGACGCTGGTCTAGATGGATATTGTATTGATGCAGGTAGCATTGATAATAACATTTCAGTGCTTTCTGCCGTGTCAAAACTTAGTTCTCAGAGCTGTCGTGATTACAATTTAGCTGCCTTATCGATTCAGAAGAAATATCGAGGCTGGAAAGGTCGTAAAGAATTCTTAGCATTGCGCCAGAAAGTAGTTAAGATACAGGCTTGTGTAAGGGGATACCAGGTTCGGAAGCAATACAAGTTAATATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTACGATGGCGCAGAAAACGAATTGGTATACGAAGTGTCCGGCAAGAAATGGAATCAAATGAAGAAGAAAGTGATGATGAAGATTTTCTCAGCGTGTTCCGGAAAGAGAAAGTAAATGCAGCAATTGAAAAGGCTTTGAAGCAGGTGCTTTCCATGGTCCATTCCTCTGGTGCTCGTCAGCAATATAGGCGCTTGCTTTTGTTGTATCGTCAAGCCAAGGCCAAGACTGAACGTGGCAGCACGAGTGATGAAGCACCCTTATCAACTTCGGAAGAGGAAGTTTCCAATATGGAAGATGATGATTTGTGTCAATTTTGGGAAACGTTCTGGCCTTCCTAG 2889 0.3461 MPPGLEYNIDDLFQEAKRRWLKPVEVLYILRNHDQCEFTHQPPHQPAGGSLLLFNRRIMRFFRKDGHNWRKKKDGKTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWMLEPEYDHIVLVHYRETSEGKSKSEHVTQLSSGSSPVFSQSHSSYTTHNPGTASMFGDSCEPNQKFSSSGSLEDTSEAQALRQLEEQLSLNEDIFNEIALDLIPGQDQRVVYKQDNSVALSGPNDPGQPCDGYNGREDDSGTYYHDFLDDCPGGNEKTIYWTEVLESCKPLSVTKLPDQHAYDAIENGKSLFSSGRGMIANREKNQWLNSNSNNVENSVFLFPQDIGVKFPPYSMVETPGTNYDYYETCFDQFQNQEPLGVDSSFTVVQKQKFTIRAVSPEYCYATETTKVIIIGSFLCHDSDSTWACMFGDVEVPAEIIQDGVICCEAPSYLLGKVNLCVTSGNRVPCSEVRGFEFRNKTTSCTRCNSLETEGSKSLEDLLLLVRFAEMLLSASTTKDDRIESGSYLSTEQKDDDDSWSHIIIDTLLDGTRTSSDTVNWLLEELLKDKLQLWLSNRRDEGTGCSFSRKEQGIIHMISGLGFEWALSPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSSQDPTGKTAASIAASHGHKGLAGYLSEVDLTSHLSSLTLEESELSKGSSELEAELTVSSVSKENLVASEDQVSLQAFLDAVRNAAQAAARIQAAFRAHSFRKRKEREAAADAGLDGYCIDAGSIDNNISVLSAVSKLSSQSCRDYNLAALSIQKKYRGWKGRKEFLALRQKVVKIQACVRGYQVRKQYKLILWAVGILDKVVLRWRRKRIGIRSVRQEMESNEEESDDEDFLSVFRKEKVNAAIEKALKQVLSMVHSSGARQQYRRLLLLYRQAKAKTERGSTSDEAPLSTSEEEVSNMEDDDLCQFWETFWPS 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00049 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 844 IPR027417 -
Gma18g00049 962 Gene3D - 793 840 - -
Gma18g00049 962 ProSiteProfiles IQ motif profile. 793 822 IPR000048 GO:0005515
Gma18g00049 962 Pfam IQ calmodulin-binding motif 818 837 IPR000048 GO:0005515
Gma18g00049 962 Pfam IQ calmodulin-binding motif 796 813 IPR000048 GO:0005515
Gma18g00049 962 Gene3D - 528 679 IPR036770 -
Gma18g00049 962 ProSiteProfiles Ankyrin repeat region circular profile. 614 640 - -
Gma18g00049 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 960 - -
Gma18g00049 962 Pfam IPT/TIG domain 386 457 IPR002909 -
Gma18g00049 962 MobiDBLite consensus disorder prediction 134 190 - -
Gma18g00049 962 ProSiteProfiles IQ motif profile. 732 761 IPR000048 GO:0005515
Gma18g00049 962 SMART iq_5 792 814 IPR000048 GO:0005515
Gma18g00049 962 SMART iq_5 815 837 IPR000048 GO:0005515
Gma18g00049 962 SMART iq_5 731 753 IPR000048 GO:0005515
Gma18g00049 962 SUPERFAMILY Ankyrin repeat 585 675 IPR036770 -
Gma18g00049 962 Pfam Ankyrin repeats (3 copies) 602 674 IPR002110 GO:0005515
Gma18g00049 962 SUPERFAMILY E set domains 386 470 IPR014756 -
Gma18g00049 962 SMART ANK_2a 614 643 IPR002110 GO:0005515
Gma18g00049 962 SMART ANK_2a 653 682 IPR002110 GO:0005515
Gma18g00049 962 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Gma18g00049 962 MobiDBLite consensus disorder prediction 927 948 - -
Gma18g00049 962 MobiDBLite consensus disorder prediction 136 190 - -
Gma18g00049 962 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Gma18g00049 962 CDD IPT 386 470 - -
Gma18g00049 962 SMART CG_1_2 12 130 IPR005559 GO:0003677
Gma18g00049 962 ProSiteProfiles Ankyrin repeat profile. 614 646 IPR002110 GO:0005515
Gma18g00049 962 PANTHER CALMODULIN-BINDING PROTEIN 1 960 - -
Gma18g00049 962 ProSiteProfiles IQ motif profile. 816 840 IPR000048 GO:0005515
Gma18g00049 962 Gene3D Immunoglobulins 380 475 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00049 Gma-Chr18 411440 419885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00049 5 952 CAMTA Transcription Factor Family AT1G67310 49.556 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gma18g00049 CG-1 5.3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00049 K21596 - gmx:100791430 1818.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00049 18 411440 419885 Gma18g00049 18 411440 419885 ECH
Gma18g00049 18 411440 419885 Gma11g02531 11 40418547 40428911 GST
Gma18g00049 18 411440 419885 Gma05g01493 05 36807577 36818222 PCT
Gma18g00049 18 411440 419885 Gma08g00978 08 8253771 8265662 PCT
Gma05g01493 05 36807577 36818222 Gma18g00049 18 411440 419885 PCT
Gma08g00978 08 8253771 8265662 Gma18g00049 18 411440 419885 PCT