Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00047 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCAGTACGAGTTTTGCAGCGGTTCAAGCATGCTCAAAACGCTGGAGAGGTACCAGAAATGCAACTATGGAGCGCCTGAGGACAATGTGGCAACAAAGGAAGCCTTGGTATTGGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCACGTTATGAAGCTCTACAACGTTCTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTTGAATCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAATAAGGACCCAATTCATGCTGGATCAGCTTTCTGATCTACAACGTAAGGAACACTTTCTAGGTGAGTCAAACAGAGATCTCAGACAAAGGTTGGAAGAGTTTCAAATAAATCCACTCCAACTGAATCCCAGTGCTGAAGATATGGGGTATGGACGCCATCCAGGTCAGCCCCAAGGCCATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACCTTACAAATTGGATATCATCCTGATCCAGTATCAGTGGTGACAGAAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGA 732 0.4508 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCSGSSMLKTLERYQKCNYGAPEDNVATKEALVLELSSQQEYLRLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSIRTQFMLDQLSDLQRKEHFLGESNRDLRQRLEEFQINPLQLNPSAEDMGYGRHPGQPQGHALFQPLECEPTLQIGYHPDPVSVVTEGPSMNNYMAGWLP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00047 243 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Gma18g00047 243 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Gma18g00047 243 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma18g00047 243 Coils Coil 128 148 - -
Gma18g00047 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma18g00047 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma18g00047 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma18g00047 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma18g00047 243 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma18g00047 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Gma18g00047 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gma18g00047 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 230 - -
Gma18g00047 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma18g00047 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00047 Gma-Chr18 392264 397142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00047 1 243 MADS-box Gene Family AT1G24260 72.764 1.11e-117 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma18g00047 K-box 4.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00047 - - gmx:547686 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00047 18 392264 397142 Gma18g00047 18 392264 397142 ECH
Gma18g00047 18 392264 397142 Gma11g02534 11 40442490 40446616 GST
Gma05g01498 05 36856858 36864642 Gma18g00047 18 392264 397142 PCT
Gma08g00980 08 8287481 8294571 Gma18g00047 18 392264 397142 PCT