LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma18g00022	ATGGCGTTCTGTAATAAGGTTGGAAATGTCTTGAGGCAGGGTGCTGCTCGCAGCACACATGCCCCTGTTGCGTCCATGCTTAATTACATCCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAAGGATGCATTTTCTGGCTTTGGAGATGTGGTTGATGCAAAAGTTATAACTGATAGAGACAGTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCAATGATGAGTCTGCAAGTTCGGCACTCTCTGCAATGGACGGGAAGGATCTAAATGGGCGAAGCATTCGGGTATCCTATGCAAATGATAAACCATCTGCACCTCGACCTGGTGGCGGTGGCGGTTATCGTGGCGGGGATTATGATGGTGATTTTGCTTCTCGTAGTGGTGGTTGGTGA	432	0.4745	MAFCNKVGNVLRQGAARSTHAPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKDLNGRSIRVSYANDKPSAPRPGGGGGYRGGDYDGDFASRSGGW	143

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma18g00022	143	Gene3D	-	31	143	IPR012677	-
	Gma18g00022	143	MobiDBLite	consensus disorder prediction	110	143	-	-
	Gma18g00022	143	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	38	108	IPR000504	GO:0003723
	Gma18g00022	143	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	36	114	IPR000504	GO:0003723
	Gma18g00022	143	PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	1	134	-	-
	Gma18g00022	143	SUPERFAMILY	RNA-binding domain, RBD	33	136	IPR035979	GO:0003676
	Gma18g00022	143	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL	1	134	-	-
	Gma18g00022	143	SMART	rrm1_1	37	110	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma18g00022	Gma-Chr18	172174	174881	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma18g00022	1	124	Eukaryotic Initiation Factors Gene Family	AT4G34110	34.677	3.39e-15	69.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma18g00022	-		-	gmx:100499841	279.256

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma18g00022	18	172174	174881	Gma11g02559	11	40636452	40638635	GST