Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02497 ATGGCGGGTCAGTCCTCCAATGAAGGCTCCAGTACTGGAAACATTTCAGCAGAATGTTCAGATTCAACTGTTCAGCTCAATATCAAGACTCTAGATTCCCGCATCTACAGTTTTCAAGTGGACAAAAATATGCCCGTCTCGTTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAATCAGCAACGGCTGATATTTAGAGGAAAAGTCTTAAAGGATGAGCACGCTCTTTCTGAGTATTATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGTCGCAGGCTTCTGGTACGAGTTCTGGTGAGTCAACTGGTACAAGTGGTAACCGAGGAAATGATGTAGGCTCAGGGGCTCCTCGTAATCATGTTGGGCAAATTTCACACAGTGTTGTTCTTGGAACATTTAATGTGGGCGAACAAGGTGAAGGAATTGTTCATGATCTCACTCGGGTTATTGGGCATGTTTTAAACTCTATTGGAAACGGTGGCCAGAGCACACTTAGTGGTCCTAATGCTACACAAACTTCTTCAGTTCACCCATGGAATGAAACTGAAGGAATGCATGCTGGAAATCAAAACTCAGCAGGAAATCAGGCACCATCTGGACAGACATTTCATGGCCCAACAGTTCAATCTGTCTCTCATGTTGTTCAGATTCCTGTGGCAGCAGGGGCCATACCCATTCCTTCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGTCTGAGTTTATGAATCGCATGGAACAGACACTAACACAAAATGGTTATCAATCAAATCTTTCATCCGCTAACCCTGGAGATCAGCAAGCGGAATTGCCTTCTAATGCACAAGGGTTGCCAACACTTGAAGCATTAAGCACTGTCTTGCATTCCGCAGAACGGTTACTTGGTGGTCAAGCTGTTGCTGCACTATCTCATATTGCAGGGCGCTTGGAAAGAGAAGGAACTTCTGCTGATCTGCGCGTAAGGGATCAAATACAATCAGAGTCAGTGCAAATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGAACAATGTTGACACTGCGTATGGGACAGTCTTCTGCAGAATCTGTTGTTAACACTGGACCAGCAGTTTACATCTCTCCATCAGGGCCAAATCCAATAATGGTGCAGCCTTTTCCATTACAGACAAGCTCCCTCTTTGGTGGTCCAGTTCCCCCCTCAACTCCTGCAACTTTAGGCACCATTGGTATTGGAAATGCTCCTAGGAACGTAAACATTCATATACATGCTGGTACCTCTCTTGCACCTATTGTTTCAGCCATTGGTTCTGGGGCAAATAATGGAGAGGGGACAAGAAGTGAACACCGTAATGAGCCTGGCTCTGGTGATTCAGGTTCAACACGGGTATTACCTGTTAGAAATGTCATAGCAGCAACTATCCCATCACACCCTCCTGGTGTTGGAATCTCTAGTAGCACACAAACTGGGTTTGGTATTCCTACTTCACAGCCACCTTCTGATTCAGCTTCATTGTCATCTGTTTTAGCAGAAATCAATTCTCGCCTTAGAAACGTTGTTGGTAATATGCATGGAGATAACACAGTTCCATCTGGTCAAATGGAATCAAACAGCAGGGACTTGCCTTCTGGATCTGAATCAAGACCTGCTACAGTAAATGAACAGCGAGATACCATGGACATGAATGGTTTTGGGGCTACTAGTGCTTCCTCAGTTGGCTGCACTTCTGAAAGTGAAGTACAAAAGCTCCAAACTAAGGCAGTCCAAACCTCTAGTAATGATGAGAGAGATGTTTTGGTTGACAAATTTGTTTCAAGTTCTTCCAACCAAGATTTACGAAGTTGTTCTAGTGGAGAAACAATAGTAAAACCAGAAAAAGAACAAGATGTTCCGGCTGTAAGTGAAAGACAAAATGTAACTGAACCTGCCAAAGCTGCTCCGCTAGGATTGGGTGTGGGTGGTTTAGAGCGCAAGAGGAGAACTAGACTTCAACCTCCTGTAAGTAAAGGTGCTGATGATAGATCATCCAGTTCTTCTGCCAATCAAAATCAGCAAACCAGAACAGATGGTCAACATATATTGCAAACTCTTGCAAGTCATGGATCTGGTTTGAATTCAAGAAATGCTAATGGGCCATCCCAGCGGTCCTTGCCCTCCAGTGATCGTCCAATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACGTAGTCCTGCCTTGAATGGTTTGTTGGAAGGAGTTTCTCAGCAAACCGGAGTTGACTCACCTGATGGCTTGAGGAATATGTTGCAGCAGTTCACACAGAGCCCACAGATGATGAACACGGTTAATCAAATTGTCCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTGCTGGAATGGAAAGAGGGCAGGGTGGTGGTATTGACATTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCTCAAGCTCTTGGTGGGGGAAATCCTTCCTCACTATTCTCTGCTGAAGAAGCTGAACCCCATGCACCCTACTGTGATGGAACAATTAACAGAGATGAATATTCTGATAATCAAAGTTTACAGCTTGACCTTCAACCACTGGCTGAGAGGATTGAGCACCTGGGTCCTTCTACTGATATTTTCCGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCAGTGGAAGCACTTCTAATGATCTTCTGGATGAGTTGTGCAGCAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCGATGTGATGTAAGTAAGCTGCTCAAGGAACATTCTGAGACGAACAATGTCTAA 2823 0.4424 MAGQSSNEGSSTGNISAECSDSTVQLNIKTLDSRIYSFQVDKNMPVSLFKEKIANEIGVPVNQQRLIFRGKVLKDEHALSEYYVENGHTLHLVERQPNQSQASGTSSGESTGTSGNRGNDVGSGAPRNHVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLNSIGNGGQSTLSGPNATQTSSVHPWNETEGMHAGNQNSAGNQAPSGQTFHGPTVQSVSHVVQIPVAAGAIPIPSLNAPIPDSLNTLSEFMNRMEQTLTQNGYQSNLSSANPGDQQAELPSNAQGLPTLEALSTVLHSAERLLGGQAVAALSHIAGRLEREGTSADLRVRDQIQSESVQIGLAMQHLGALLLELGRTMLTLRMGQSSAESVVNTGPAVYISPSGPNPIMVQPFPLQTSSLFGGPVPPSTPATLGTIGIGNAPRNVNIHIHAGTSLAPIVSAIGSGANNGEGTRSEHRNEPGSGDSGSTRVLPVRNVIAATIPSHPPGVGISSSTQTGFGIPTSQPPSDSASLSSVLAEINSRLRNVVGNMHGDNTVPSGQMESNSRDLPSGSESRPATVNEQRDTMDMNGFGATSASSVGCTSESEVQKLQTKAVQTSSNDERDVLVDKFVSSSSNQDLRSCSSGETIVKPEKEQDVPAVSERQNVTEPAKAAPLGLGVGGLERKRRTRLQPPVSKGADDRSSSSSANQNQQTRTDGQHILQTLASHGSGLNSRNANGPSQRSLPSSDRPIDVAGLMSQALRSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIVQQVGSQDVGNMFAGMERGQGGGIDISRMFQQMMPIVSQALGGGNPSSLFSAEEAEPHAPYCDGTINRDEYSDNQSLQLDLQPLAERIEHLGPSTDIFRAVAENAVQLSGSGSTSNDLLDELCSNESLAREYVDMLRCDVSKLLKEHSETNNV 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02497 940 MobiDBLite consensus disorder prediction 633 697 - -
Gma17g02497 940 Gene3D - 13 108 - -
Gma17g02497 940 MobiDBLite consensus disorder prediction 169 215 - -
Gma17g02497 940 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Gma17g02497 940 PRINTS Ubiquitin signature 55 75 IPR019956 -
Gma17g02497 940 PRINTS Ubiquitin signature 76 97 IPR019956 -
Gma17g02497 940 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 4 937 - -
Gma17g02497 940 MobiDBLite consensus disorder prediction 483 512 - -
Gma17g02497 940 MobiDBLite consensus disorder prediction 530 561 - -
Gma17g02497 940 SUPERFAMILY Ubiquitin-like 19 98 IPR029071 -
Gma17g02497 940 CDD Ubl_ubiquitin_like 26 93 - -
Gma17g02497 940 MobiDBLite consensus disorder prediction 710 732 - -
Gma17g02497 940 MobiDBLite consensus disorder prediction 448 471 - -
Gma17g02497 940 PANTHER OS07G0498800 PROTEIN 4 937 - -
Gma17g02497 940 MobiDBLite consensus disorder prediction 679 697 - -
Gma17g02497 940 MobiDBLite consensus disorder prediction 95 121 - -
Gma17g02497 940 MobiDBLite consensus disorder prediction 710 729 - -
Gma17g02497 940 MobiDBLite consensus disorder prediction 95 129 - -
Gma17g02497 940 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Gma17g02497 940 MobiDBLite consensus disorder prediction 488 512 - -
Gma17g02497 940 SMART ubq_7 24 95 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02497 Gma-Chr17 42980657 42991089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02497 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.31e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02497 - - gmx:100783611 1780.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02497 17 42980657 42991089 Gma14g02180 14 52926876 52943593 GST