Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02490 ATGAAAATGGGAGTGGGGTTCTCTAAGGTGTTAACAAAGAAACCAGAGCATGAAATTCCCATTAATGCCTCCCCAGATTACACTCCTCAACTGACCTACAAACAACCAAGGAAAAACCTTCTAATTGCACCTCCACTTCCACTTCCTCCTCCTAAGCCTACCGAATGTTGTTCACAAACAGAACCAGTTCTAGGGAAACCTTACGTTAAAATAAAGCAAATGTACGAGATGAAGGAAGAGCTGGGAAGAGGAAAATTTGGAGTGACTTATCTGTGTGTAGAGAAGGCCACAGGACGAGCGTATGCATGCAAATCCATAGCAAAGAAGAAGCCGCCACAAGAAAtggaggatgtgagaatggaggttgtgattctgcagcatctttcggagcaacacaacatagtggaattcaagggagcttatgaggacaggaagaacgtgcaccttgtcatggagctgtgtagtgggggtgaactcttcgaccgcatcgttgccaaagggaactacaccgagcgtcaagccgccaaaatcatgagacagattgtgaatgtggttcatgtctgtcatttcatgggtgtcatgcatcgagacctcaagccagagaatttcttgttcgccaccaaggacgaggatgccccattgaaactcaccgattttggatcctctgtcttctttCACAAAGGTAAAGTATGCACAGATTTTGTTGGAAATGCATATTACGTGGCTCCAGAGGTTTTGAAACGGAGTCATGGAAAGGAGATAGATGTCTGGAATGCAGGAGTCATTTTGTACATTCTCTTGAGTGGGGTGCCTCCATTTTGGGCTGAAACTGAGAAAGGCATATTTGATGCTATTTTGGGAGGAAAGTTAGATATGGATAGCGAGCCATGGCCTTCTATTTCAGAAGCTGCAAAAGATTTGGTTAGAAAAATGCTGACTTGCGACCCTAAGGAACGCATTACAGCTGCTGATGCCCTCGAACACCCTTGGTTGAAGGAAGGTGGTGAAGCATCAGACAAGCTTCCAGACAGTGCTGTTTTAATTAGGATGAAACGGTTTAGAGCAATGAACCAGATGAAGAAGCTTGCTCTGAAGGTAATAGCAGAAAATATTTCAGAGAAAGAAACAAAGGGCCTGATACAAATGTTCAACAATATGGATACTGATGGCAGTGGCACAATCACATTTGAAGAACTCAAATCTGGATTGTTTAGATTGGGTTCCCTGGTTAATGAATCTGAAATGAAGCAGCTAATGGATGCTGCTGATATTGACAAGAGTAGGACTATTGACTACTTTGAATTCATTGCTGCCACTATGGATCGGCATAAAGTGGAAAAGGAAGAGAGTTTGTTCAAGGCTTTTCAATACTTTGACAAGGATAACAATGGTTACATAACAAGAGATGAACTTAGAGAAGCAATAACTGAACACCAGGGAGATGAAGCTGCTATAGATGAAGTCTTCAACGATGTTGACTCTGACAAAGATGGGAAAATTGATTATCACGAGTTTATGACCATGATGAAAAATGAATGCTAA 1542 0.3223 MKMGVGFSKVLTKKPEHEIPINASPDYTPQLTYKQPRKNLLIAPPLPLPPPKPTECCSQTEPVLGKPYVKIKQMYEMKEELGRGKFGVTYLCVEKATGRAYACKSIAKKKPPQEMEDVRMEVVILQHLSEQHNIVEFKGAYEDRKNVHLVMELCSGGELFDRIVAKGNYTERQAAKIMRQIVNVVHVCHFMGVMHRDLKPENFLFATKDEDAPLKLTDFGSSVFFHKGKVCTDFVGNAYYVAPEVLKRSHGKEIDVWNAGVILYILLSGVPPFWAETEKGIFDAILGGKLDMDSEPWPSISEAAKDLVRKMLTCDPKERITAADALEHPWLKEGGEASDKLPDSAVLIRMKRFRAMNQMKKLALKVIAENISEKETKGLIQMFNNMDTDGSGTITFEELKSGLFRLGSLVNESEMKQLMDAADIDKSRTIDYFEFIAATMDRHKVEKEESLFKAFQYFDKDNNGYITRDELREAITEHQGDEAAIDEVFNDVDSDKDGKIDYHEFMTMMKNEC 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02490 513 Gene3D - 349 440 - -
Gma17g02490 513 ProSiteProfiles Protein kinase domain profile. 75 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g02490 513 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Gma17g02490 513 SMART serkin_6 75 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g02490 513 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Gma17g02490 513 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Gma17g02490 513 SUPERFAMILY Protein kinase-like (PK-like) 61 354 IPR011009 -
Gma17g02490 513 Gene3D Transferase(Phosphotransferase) domain 1 159 346 - -
Gma17g02490 513 ProSiteProfiles EF-hand calcium-binding domain profile. 410 445 IPR002048 GO:0005509
Gma17g02490 513 CDD EFh 451 510 IPR002048 GO:0005509
Gma17g02490 513 Pfam EF-hand domain pair 449 510 IPR002048 GO:0005509
Gma17g02490 513 Pfam EF-hand domain pair 379 439 IPR002048 GO:0005509
Gma17g02490 513 SMART efh_1 450 478 IPR002048 GO:0005509
Gma17g02490 513 SMART efh_1 414 442 IPR002048 GO:0005509
Gma17g02490 513 SMART efh_1 378 406 IPR002048 GO:0005509
Gma17g02490 513 SMART efh_1 484 512 IPR002048 GO:0005509
Gma17g02490 513 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
Gma17g02490 513 SUPERFAMILY EF-hand 370 509 IPR011992 -
Gma17g02490 513 Gene3D Phosphorylase Kinase; domain 1 77 158 - -
Gma17g02490 513 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 47 511 - -
Gma17g02490 513 CDD STKc_CAMK 75 330 - -
Gma17g02490 513 PANTHER SERINE/THREONINE-PROTEIN KINASE 47 511 - -
Gma17g02490 513 Pfam Protein kinase domain 75 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g02490 513 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Gma17g02490 513 ProSitePatterns EF-hand calcium-binding domain. 423 435 IPR018247 -
Gma17g02490 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Gma17g02490 513 ProSiteProfiles EF-hand calcium-binding domain profile. 482 513 IPR002048 GO:0005509
Gma17g02490 513 Gene3D - 357 509 - -
Gma17g02490 513 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02490 Gma-Chr17 42926020 42928929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02490 25 511 EF-hand Containing Proteins AT3G20410 63.200 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma17g02490 Pkinase 3.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02490 K13412 - gmx:100792610 1022.69