Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02489 atggagttgtgtttgggtggtacactctttgatcgcatcactgcaaagggtagttactctgagagtgaagctgcttctatatttagacaaattgtcaacgtggttcatgcttgtcattttatgggggtcatgcatagagacttaaagcctgaaaatttcttgcttgctagtaaggatcctaaggcacctctcaaagccaccaattttggattgtccgtcttcattgaagaagGTAAAGTGTATAAAGAAATTGTTGGAAGTGCATACTATATGGCTCCGGAGGTGTTAAACCGAAATTACGGAAAGGAGATAGATGTGTGGAGCGCAGGAATCATTTTATACATCCTTCTAAGTGGGGTGCCTCCATTTTGGGGTGAAAACGATAGAAGCATATTTGAATCTATTTTGGGAGGCCAGCTTGATCTAGAGAGTGCACCATGGCCTTCTATTTCAGCTGCTGCTAAAGATTTGATCAGGAAAATGTTGAATTATGACCCTAAGAAACGCATTACAGCTGTTGAAGCCCTTGaacacccgtggatgaaggaaggtggtgaagcatctgacaagcctttagataatgtcattttgactagaatgaaacagttcagagcaatgaacaagatgaagaaacttgctttaaagGTTATAGCAGAAAACCTTTCAGAGGAGGAAACAAAGGGCTTAAAACAAATGTTCAGCAATATGGATATTGATCGTAGTGGCACAATCTCATACGAGGAACTCAAATCTGGATTGACCAAATTGGGATCCAAGCTTAGTGAATATGAAATAAAGCAGCTAATGGCCGCTGTTGATGTTGACAATAGCGGGACTATTGACTATCTAGAGTTCATCGCTGCCACCATAGACCCGCATAAACTAGAGAAGGAAGAGCATCTGTATAAGGCTTTTCAATACTTTGACAAGGATAACAACGGATACATAACAAGAGATGAGCTTAGTCAAGCTTTGACTAAGTATCAAATGGGAGATGAAGCAACTATATATGAAGTCATCAATGATGTTGACACTGACAACGATGGGAGAATTAATTACCAAGAGTTTGTGGATATGATGAGAGGGGATCCTGGATATTGA 1101 0.2743 MELCLGGTLFDRITAKGSYSESEAASIFRQIVNVVHACHFMGVMHRDLKPENFLLASKDPKAPLKATNFGLSVFIEEGKVYKEIVGSAYYMAPEVLNRNYGKEIDVWSAGIILYILLSGVPPFWGENDRSIFESILGGQLDLESAPWPSISAAAKDLIRKMLNYDPKKRITAVEALEHPWMKEGGEASDKPLDNVILTRMKQFRAMNKMKKLALKVIAENLSEEETKGLKQMFSNMDIDRSGTISYEELKSGLTKLGSKLSEYEIKQLMAAVDVDNSGTIDYLEFIAATIDPHKLEKEEHLYKAFQYFDKDNNGYITRDELSQALTKYQMGDEATIYEVINDVDTDNDGRINYQEFVDMMRGDPGY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02489 366 SUPERFAMILY EF-hand 220 362 IPR011992 -
Gma17g02489 366 Pfam EF-hand domain pair 229 289 IPR002048 GO:0005509
Gma17g02489 366 Pfam EF-hand domain pair 298 361 IPR002048 GO:0005509
Gma17g02489 366 Gene3D - 189 362 - -
Gma17g02489 366 SUPERFAMILY Protein kinase-like (PK-like) 1 196 IPR011009 -
Gma17g02489 366 ProSiteProfiles EF-hand calcium-binding domain profile. 224 259 IPR002048 GO:0005509
Gma17g02489 366 SMART efh_1 264 292 IPR002048 GO:0005509
Gma17g02489 366 SMART efh_1 228 256 IPR002048 GO:0005509
Gma17g02489 366 SMART efh_1 335 363 IPR002048 GO:0005509
Gma17g02489 366 SMART efh_1 300 328 IPR002048 GO:0005509
Gma17g02489 366 ProSiteProfiles EF-hand calcium-binding domain profile. 296 331 IPR002048 GO:0005509
Gma17g02489 366 ProSitePatterns EF-hand calcium-binding domain. 237 249 IPR018247 -
Gma17g02489 366 Pfam Protein kinase domain 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g02489 366 ProSitePatterns EF-hand calcium-binding domain. 344 356 IPR018247 -
Gma17g02489 366 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 1 362 - -
Gma17g02489 366 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 362 - -
Gma17g02489 366 ProSiteProfiles EF-hand calcium-binding domain profile. 260 295 IPR002048 GO:0005509
Gma17g02489 366 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g02489 366 ProSitePatterns EF-hand calcium-binding domain. 273 285 IPR018247 -
Gma17g02489 366 ProSiteProfiles EF-hand calcium-binding domain profile. 332 366 IPR002048 GO:0005509
Gma17g02489 366 SMART serkin_6 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g02489 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 43 55 IPR008271 GO:0004672|GO:0006468
Gma17g02489 366 CDD STKc_CAMK 1 180 - -
Gma17g02489 366 Gene3D Transferase(Phosphotransferase) domain 1 4 188 - -
Gma17g02489 366 ProSitePatterns EF-hand calcium-binding domain. 309 321 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02489 Gma-Chr17 42918182 42922114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02489 1 364 EF-hand Containing Proteins AT3G20410 71.233 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma17g02489 Pkinase 1.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02489 K13412 - gmx:100816157 615.535