Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02486 ATGAGTGAAGACGTGGAGATGAAAGATCAGGCAACGCCTTCACACTCGCTTTCTTCAGTTCCTCCATCTGCATTGCAGCATTTGAAGGAAATAGCATCAATTATTGAAACCGGTTCGTACTCAAAGGAAGTTCGTCGAATTGCTCGTGCCCTGCGCCTTACATTTGCATTGAGGCGTAAATTGACAGCACCAGTTCTCTCATCTTTCCTCGATTATGTTCTTCCTCCCGCTTCTGAACCTCACACTAGGTTATCCTCTTTTCTCCCTAATCCTAAGGAGGGTGATCGAGAGATGGAAGTGGACAGTTCAACATCTACTATTCAAACCCCGGCGGCAAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTGATCGACCAGAAAAGATACGACACGGCCAAAGCTTGTTCCTCAGCAAGCATTGTTCGGCTGAAGAGCCTGAATAGAAGAACTGTCAATGTTATTGCATCCAGACTGTACTTTTATTACTCATATAGCTATGAGCTCACTGGAAATCTTGCTGAAATTCGAGGTAACCTCCTTGCATTGCACCGGATTGCTACCCTGCGCCATGATGAGCTGGGTCAGGAAACCCTTCTGAATCTGTTACTTCATAACTACCTACACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCTAAGGCTCCACGTTTTGAGGCACATTCAAACCAGCAGTTCTGCCGTTATCTCTTCTACCTTGGGAAAATTCGCACAATTCAGCTGGAGTACACCGATGCAAAAGACTTGCTCTTGCAGGCTGCTCGTAAAGCTCCCAGTGCAGCACAGGGTTTTCAGATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTGTTATTGGGAGAAATACCTGAGAGGATAATCTTTATGCATAGAGGAATGGAGAAATCTTTGAGGCCTTACTTTGAGCTTACTAATGCTGTCCGGATTGGTGACTTGGAGCTATTTAGGAATGCTACAGAGAAGTTTGGTACGACTTTCAGTAGAGACCGAACTCATAATTTGATTGTTCGGCTCCGTCATAATGTCATCCGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATCTCGCTAGCTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCAAGTCCTGTTGCTGACTCTGAGAGCATTGTAGCAAAGGCTATCCGTGATGGGGCCATTGATGCTTCATTGGATCATGCCAATGGGTGGATGGTATCCAAGGGAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCCTTAATTCTCGGATTGCCTTTTGTCTTAACATGTACAATGAGGCTGTTCGAGCACTGCGTTTTCCACCAAACAAAGACAAGGAAAAGGAAAATGCTGAGAAGAGGAGAGAGAGGCATCAACAAGAGCAAGAATTGGCTAAGCATATCGCAGAGGAAGATGATGATGACTTCTGA 1473 0.4481 MSEDVEMKDQATPSHSLSSVPPSALQHLKEIASIIETGSYSKEVRRIARALRLTFALRRKLTAPVLSSFLDYVLPPASEPHTRLSSFLPNPKEGDREMEVDSSTSTIQTPAAKHLLPELEIYCYLLVLLFLIDQKRYDTAKACSSASIVRLKSLNRRTVNVIASRLYFYYSYSYELTGNLAEIRGNLLALHRIATLRHDELGQETLLNLLLHNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKDLLLQAARKAPSAAQGFQIQCNKWAVIVRLLLGEIPERIIFMHRGMEKSLRPYFELTNAVRIGDLELFRNATEKFGTTFSRDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADSESIVAKAIRDGAIDASLDHANGWMVSKGTGDIYSTNEPQLALNSRIAFCLNMYNEAVRALRFPPNKDKEKENAEKRRERHQQEQELAKHIAEEDDDDF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02486 490 SUPERFAMILY "Winged helix" DNA-binding domain 349 423 IPR036390 -
Gma17g02486 490 SMART PINT_4 348 441 IPR000717 -
Gma17g02486 490 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 490 - -
Gma17g02486 490 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 348 441 - -
Gma17g02486 490 MobiDBLite consensus disorder prediction 454 483 - -
Gma17g02486 490 Coils Coil 457 484 - -
Gma17g02486 490 MobiDBLite consensus disorder prediction 454 490 - -
Gma17g02486 490 Gene3D - 247 419 - -
Gma17g02486 490 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 490 - -
Gma17g02486 490 Pfam PCI domain 314 419 IPR000717 -
Gma17g02486 490 ProSiteProfiles PCI domain profile. 242 423 IPR000717 -
Gma17g02486 490 MobiDBLite consensus disorder prediction 1 22 - -
Gma17g02486 490 Pfam Proteasome regulatory subunit C-terminal 423 489 IPR013586 GO:0000502|GO:0030234|GO:0042176
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02486 Gma-Chr17 42898576 42903804 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02486 K03033 - gmx:100779667 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02486 17 42898576 42903804 Gma17g02486 17 42898576 42903804 ECH
Gma17g02486 17 42898576 42903804 Gma14g02160 14 52738780 52744119 GST
Gma17g02486 17 42898576 42903804 Gma04g00201 04 1723532 1726452 PCT
Gma17g02486 17 42898576 42903804 Gma06g00189 06 1655488 1658963 PCT
Gma04g00201 04 1723532 1726452 Gma17g02486 17 42898576 42903804 PCT
Gma06g00189 06 1655488 1658963 Gma17g02486 17 42898576 42903804 PCT