Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02485 ATGGGCAAAATCATGCTTGTTTTGGGTAGCCTCATTGGATTATGCTGTTTCACAATCACTACCTATGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGGGGTAGTGATGCTTCAGGAACTATGGGGGGAGCTTGTGGGTATGGGAATCTGTATGCAACTGGGTATGGAACTAGAACTGCAGCTTTAAGCACTGCCTTATTTAATGATGGAGCTTCCTGTGGTCAGTGCTACAAAATTATATGTGATTACAAATCAGACTCTAGATGGTGCATCAAAGGAAGATCTGTAACCGTAACTGCCACAAACTTTTGCCCTCCCAATTTCGCCCTTCCTAACAACAATGGAGGCTGGTGCAACCCACCACTCAAGCATTTTGATATGGCCCAACCCGCTTGGGAAAAGATTGGTATTTACAGAGGAGGGATCGTCCCCGTGCTATTTCAAAGGGTTCCATGCAAAAAGCATGGAGGGGTTAGGTTCAGTGTGAATGGGAGGGACTACTTTGAGCTAGTATTGATCAGCAATGTGGGGGGTGCTGGATCCATCCAATCAGTGTTCATTAAAGGCTCAAAAACTGGATGGATGGCAATGTCAAGAAATTGGGGTTCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACCACCACTGATGGAGAGACCAGAGTTTTCCAAGATATTGTTCCAGCAAGTTGGACATTCGGCCAAACTTTCTCTAGCCCAGTTCAGTTCTAA 768 0.4531 MGKIMLVLGSLIGLCCFTITTYAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNDGASCGQCYKIICDYKSDSRWCIKGRSVTVTATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNVGGAGSIQSVFIKGSKTGWMAMSRNWGSNWQSNAYLNGQSLSFRVTTTDGETRVFQDIVPASWTFGQTFSSPVQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02485 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Gma17g02485 255 Pfam Lytic transglycolase 64 151 IPR009009 -
Gma17g02485 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Gma17g02485 255 PANTHER EXPANSIN-A15 4 255 IPR002963 GO:0009664
Gma17g02485 255 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Gma17g02485 255 Gene3D - 162 255 IPR036749 -
Gma17g02485 255 SMART dpbb_1 64 152 IPR007112 -
Gma17g02485 255 SUPERFAMILY Barwin-like endoglucanases 20 180 IPR036908 -
Gma17g02485 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Gma17g02485 255 Gene3D - 16 158 IPR036908 -
Gma17g02485 255 PANTHER EXPANSIN 4 255 - -
Gma17g02485 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Gma17g02485 255 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Gma17g02485 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Gma17g02485 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Gma17g02485 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Gma17g02485 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Gma17g02485 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Gma17g02485 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Gma17g02485 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Gma17g02485 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Gma17g02485 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Gma17g02485 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Gma17g02485 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Gma17g02485 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Gma17g02485 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02485 Gma-Chr17 42895333 42897384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02485 64 255 Expansin Gene Family AT1G20190 81.771 6.59e-121 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02485 - - gmx:548040 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02485 17 42895333 42897384 Gma17g02485 17 42895333 42897384 ECH
Gma17g02485 17 42895333 42897384 Gma14g02159 14 52735742 52737646 GST
Gma17g02485 17 42895333 42897384 Gma04g00203 04 1735939 1737936 PCT
Gma17g02485 17 42895333 42897384 Gma06g00190 06 1661724 1667169 PCT
Gma04g00203 04 1735939 1737936 Gma17g02485 17 42895333 42897384 PCT
Gma06g00190 06 1661724 1667169 Gma17g02485 17 42895333 42897384 PCT