Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02481 ATGGTCACTGCTGCTAAATCTTCAAACCACCATTCGCCGCCCAGTGCTCCGTCACCGGCGCAGCCCAGCGACGCCAACAGCCCTAAGTTCAGGCGCAAAAATCTTCCCTCCCCGTGGGTTCAGCTTGTTCACGGTGGCGAGCCCCAACCGGGGAGCGGCATTCACCAATCGCCGCCGTCATCGTCGTCCTCGTCCTCGTCTCTGGTTGCTGACCAAGCCCCAGAGGTGGATAATTCTAATACGGTTGGTGATGTAGATAGTTCCGATGGCGCTGAGGGCAATGCGGATCGTTCTAAAAAGCTCGTTTGGAACAAGCCCTCAAACGGCGTTGTCGTCGAGACTGGGCCTGTAATGGGCGCTGCTGAATCATGGCCCACTTTGCTTGCGTCCACCAAAGGTTCTGCTAAATTGCCTCCTGAATCGTCCTCCAATACTGTTATCGATTATGGATCACTCTCCACTTCTCCTCAGGGGCCAATGGCTTCACAATCTCCTCAGAAACAAGCGACCACTAATGCAAAACCTAATTCTGCTCCAAATTATAATGTGCCTGGTAGACAAAGATCAATGAAGCGGGTAGGTGGCAGCAGCAGCACTGTGTCTGATCCTTCACAGGGCAACTTCTCTAACCCTCCCCCACCACCGCCGCCCCCGCCTTTTCCTGTATACCAGCTCCCACCAGTTAGCTATTGTAATATGGTACCAGGGGTCCCTGACCCTGCTCCAAGAGATCATTACCGGAACAATAACTGGGATGCAGGACCAATGGTAGGGGGTTTTGTGCCTGCCATGAATGGATATCGGGGTTCCTCTCGCAGGGGTTATTTTGGGCCTCATCCCCGAGGAGATGGTTCCTATCATAATAGTTATGGTAGCCGGCGTGATCATCAAGATCGTGGAAATTATGTGAATACTAGAGATGCATTTGTTCCTCAACCAAGGATGCCTCCAAGAGGATTACCGAGACACACACCACCACCTACTACTGCTGCTGCATTTGTGGGACCTCAGCCTATTGGACCATTTGCTAAACCCATTGGTTTTCCTGAGTTTTATTACTACCAACCAGTAACAGTGGAACAGTTTACGGGTATGTCGTTCTTCGCTCACAGCCCTCCTCCTACACCGTTCTTCTCTGCTGCAGAATCTCCTCTCTCTAATATGATAGTCTATCAAATTGAATATTACTTTAGTGATGCTAATTTAGTGAAAGATGCGTTTTTAAGGTCTAAAATGGATGAACAAGGTTGGGTTCCTGTTACTTTGATAGCAGACTTCCCTCGAGTTAAAAGTTTGACAACCAACATTCAGTTGATACTCGATTCGATCAGGACTTCTGCTATCGTGGAAGTGCAAGGTGACAAGCTAAGGAGACTTAACGAGTGGAAAAGATGGTTGTCCTCTACTCAGCGAGGTTCAACATCTCCCATTGGATCAAGATACAATAACCTTACAACTAATCTTCAAACCATCAAATTGGAAGAAACAATTAAAGATGAAGATCCAAGAATGTCAAATGGTGGTGATGCTACCGGGAGCAGCAGTGGAAACAACTAA 1557 0.4843 MVTAAKSSNHHSPPSAPSPAQPSDANSPKFRRKNLPSPWVQLVHGGEPQPGSGIHQSPPSSSSSSSSLVADQAPEVDNSNTVGDVDSSDGAEGNADRSKKLVWNKPSNGVVVETGPVMGAAESWPTLLASTKGSAKLPPESSSNTVIDYGSLSTSPQGPMASQSPQKQATTNAKPNSAPNYNVPGRQRSMKRVGGSSSTVSDPSQGNFSNPPPPPPPPPFPVYQLPPVSYCNMVPGVPDPAPRDHYRNNNWDAGPMVGGFVPAMNGYRGSSRRGYFGPHPRGDGSYHNSYGSRRDHQDRGNYVNTRDAFVPQPRMPPRGLPRHTPPPTTAAAFVGPQPIGPFAKPIGFPEFYYYQPVTVEQFTGMSFFAHSPPPTPFFSAAESPLSNMIVYQIEYYFSDANLVKDAFLRSKMDEQGWVPVTLIADFPRVKSLTTNIQLILDSIRTSAIVEVQGDKLRRLNEWKRWLSSTQRGSTSPIGSRYNNLTTNLQTIKLEETIKDEDPRMSNGGDATGSSSGNN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02481 518 MobiDBLite consensus disorder prediction 191 206 - -
Gma17g02481 518 MobiDBLite consensus disorder prediction 496 518 - -
Gma17g02481 518 ProSiteProfiles La-type HTH domain profile. 379 468 IPR006630 -
Gma17g02481 518 PANTHER LUPUS LA PROTEIN-RELATED 6 512 IPR045180 -
Gma17g02481 518 MobiDBLite consensus disorder prediction 53 87 - -
Gma17g02481 518 MobiDBLite consensus disorder prediction 1 116 - -
Gma17g02481 518 Gene3D - 379 469 IPR036388 -
Gma17g02481 518 SMART la 383 459 IPR006630 -
Gma17g02481 518 PANTHER LA-RELATED PROTEIN 1B 6 512 - -
Gma17g02481 518 MobiDBLite consensus disorder prediction 131 221 - -
Gma17g02481 518 MobiDBLite consensus disorder prediction 207 221 - -
Gma17g02481 518 MobiDBLite consensus disorder prediction 131 184 - -
Gma17g02481 518 CDD LAM 387 458 - -
Gma17g02481 518 Pfam La domain 389 444 IPR006630 -
Gma17g02481 518 SUPERFAMILY "Winged helix" DNA-binding domain 379 467 IPR036390 -
Gma17g02481 518 MobiDBLite consensus disorder prediction 275 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02481 Gma-Chr17 42867458 42871583 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02481 K18757 - gmx:100778603 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02481 17 42867458 42871583 Gma17g02481 17 42867458 42871583 ECH
Gma17g02481 17 42867458 42871583 Gma14g02155 14 52698217 52702624 GST
Gma17g02481 17 42867458 42871583 Gma04g00206 04 1752932 1758604 PCT
Gma17g02481 17 42867458 42871583 Gma06g00192 06 1676596 1681672 PCT
Gma04g00206 04 1752932 1758604 Gma17g02481 17 42867458 42871583 PCT
Gma06g00192 06 1676596 1681672 Gma17g02481 17 42867458 42871583 PCT