Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02459 ATGGCTCTCCTAACTTCCTTACCTGAACAGTCCTCCAGTACCCCCAAACGCCACCACAAGCGCAAACCCCAACAACAACAACAACAACAGAAACAGAAACCAGCTTCCTCATGGGACCAAATCAAGAACCTCTTAACCTGCAAACAGATCGAAGGGTCGAGAGTGCATGACCCTTCAAAAGTGGTAAGTGGGTACTCGAAGCTAGGGTCATCTTGCAGCTCCATATGCAGCTTCAGAGATGTGGTTCATGGGAACACACGTGTTGTGCACAGGTCTGATAACTCCTCACCAGAGAGTAGTTCTCTGGGTCAGGAAACTAATGGGTTACTCACTAggaaacctgttactactactactactactactactCGCTCTTCTGCAAAATCACACGGTGGAGCAACCTACACGTCATCATCATCTTCCAGAGGCATGCAATTCAGGAAGCTTTCTGGGTGTTATGAATGTCACATGATCATTGACCCTAGCAGGTTGCCAATTGCGAGGAGCACTGTGTGTGCTTGTTCTCACTGTGGTGAGGTCTTCCCTAAAATGGAAAGTTTGGAGCTTCATCAAGCTGTTCGTCATGCTGTTTCGGAGCTAGGTCCGGAGGATTCGGGTCGGAACATAGTGGAAATAATCTTCAAGTCGAGTTGGTTGAAGAAGGACAACCCGATATGCAAGATCGAACGGATACTAAAAGTGCACAACACCCAACGCACCATCCAACGGTTCGAGGAGTGCAGGGACACCGTAAAGAACCGTGCGCTGGGCAGCACCAAGAAAAACCCCAGGTGCGCAGCAGACGGCAACGAACTCTTGCGGTTCCACTGCACCACCTTAACGTGCGCACTGGGCGCACGTGGCTCCTCCTCCCTCTGCGCCTCCGTACATGGCAGTTGCGGTGTCTGCACCATCATCAGGCACGGTTTCCAAGGTGGTAGTTGCGGCGGCGGCAGTGGAGACCACGGGAAGGCGAAGGGCGTGAGGACCACCGCCAGCAGCGGTAGGGCCCACGACTCTGTTGTGTGCGGTGACGCCACGCGCAGGGCTATGCTTGTGTGTCGCGTGATCGCTGGAAGAGTGAAGCGCGTGGTCGAAGACGCGCCGTCCGAGGAGGAACACGTGTCGGTTGCGTCGTATGATTCCGTTGCTGGGTACGCTGGAATCTACTCGAATCTCGAGGAACTTGTTGTTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTAGTCATTTACAAAGTCCCTTCGTGTTAG 1254 0.5144 MALLTSLPEQSSSTPKRHHKRKPQQQQQQQKQKPASSWDQIKNLLTCKQIEGSRVHDPSKVVSGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSSLGQETNGLLTRKPVTTTTTTTTRSSAKSHGGATYTSSSSSRGMQFRKLSGCYECHMIIDPSRLPIARSTVCACSHCGEVFPKMESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDNPICKIERILKVHNTQRTIQRFEECRDTVKNRALGSTKKNPRCAADGNELLRFHCTTLTCALGARGSSSLCASVHGSCGVCTIIRHGFQGGSCGGGSGDHGKAKGVRTTASSGRAHDSVVCGDATRRAMLVCRVIAGRVKRVVEDAPSEEEHVSVASYDSVAGYAGIYSNLEELVVFNPKAILPCFVVIYKVPSC 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02459 417 MobiDBLite consensus disorder prediction 89 140 - -
Gma17g02459 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 200 IPR013087 -
Gma17g02459 417 SUPERFAMILY ADP-ribosylation 197 413 - -
Gma17g02459 417 ProSitePatterns Zinc finger C2H2 type domain signature. 172 195 IPR013087 -
Gma17g02459 417 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 22 414 - -
Gma17g02459 417 Gene3D - 196 414 - -
Gma17g02459 417 MobiDBLite consensus disorder prediction 1 38 - -
Gma17g02459 417 PANTHER BNAC02G23540D PROTEIN 22 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02459 Gma-Chr17 42622505 42626373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02459 1 414 C2H2 Transcription Factor Family AT1G75710 63.383 2.14e-178 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma17g02459 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02459 - - gmx:100816726 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02459 17 42622505 42626373 Gma17g02459 17 42622505 42626373 ECH
Gma17g02459 17 42622505 42626373 Gma14g02130 14 52475750 52479216 GST