Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02431 ATGCTGAAATCAGGCATGGGAATTCAGGAGAGAAAGAAGGTGAAGAAACCTGCACAAGCCAGTTCCAGAAAGGGGTGTATGAGAGGGAAAGGTGGCCCTGAGAATGCTACTTGCACCTACAAAGGTGTGAGGCAAAGAACCTGGGGAAAATGGGTTGCTGAAATACGTGAACCCAACCGTGGTGCAAGGCTCTGGCTTGGAACCTTTGACACCGCTCGTGAGGCTGCTTTGGCCTATGATGCTGCTGCCAGAAAGCTTTATGGACCTGATGCAAAACTCAACCTCCCAGAACTCTCTGTGCCTTATGCTGCTGGAGTGATGAATCCTTCTCACATGCAACAACAGCAACAGCAACAGCAACAACCTCAGGTTCCCCAAATGATGATGCAACAACAACAGCCTCTCGTGCACCCTACCTTTGACCTTGTCAATGTCACTCCTCATTCTGATTTCAACAACAACAGCATCAACATCCTCAACAACAACCCCGTGGTCTCTTCCATGGCTTCTTCTTTTCTTGCAGATGCAGCAGCACCCGTGTATACCAGCTGCGACTCTATTGTCTCTCTTCCGTTGTCTGCAACCAATTACACCACCAACAACACGGTGCCGATGGAAATGGACGGCTACTACTATTCCTCCATCGCTGTGGAGAGCAAGGAGGACGACATGTTTCGCCCCTTCTGGGGTCCAACAATGGACGACACCATGCCTGTGTCTGATGAGTCCATCTGGACTGAAGCTGCTATGTCTCTTGATTATCCTATTGTTGGAGGAGGAGGCGGGTTCGGTAACAACCGAAAATTCTTCTTTGGAGAAGCTACTGCGTGGGACTCCCTGCAAACTCCTTCTTTCTGCATGTAA 864 0.4965 MLKSGMGIQERKKVKKPAQASSRKGCMRGKGGPENATCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAREAALAYDAAARKLYGPDAKLNLPELSVPYAAGVMNPSHMQQQQQQQQQPQVPQMMMQQQQPLVHPTFDLVNVTPHSDFNNNSINILNNNPVVSSMASSFLADAAAPVYTSCDSIVSLPLSATNYTTNNTVPMEMDGYYYSSIAVESKEDDMFRPFWGPTMDDTMPVSDESIWTEAAMSLDYPIVGGGGGFGNNRKFFFGEATAWDSLQTPSFCM 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02431 287 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Gma17g02431 287 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Gma17g02431 287 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 261 - -
Gma17g02431 287 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Gma17g02431 287 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Gma17g02431 287 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 261 - -
Gma17g02431 287 MobiDBLite consensus disorder prediction 1 16 - -
Gma17g02431 287 MobiDBLite consensus disorder prediction 1 32 - -
Gma17g02431 287 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Gma17g02431 287 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Gma17g02431 287 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Gma17g02431 287 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02431 Gma-Chr17 42280166 42281029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02431 13 110 AP2-EREBP Transcription Factor Family AT1G75490 77.551 4.35e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma17g02431 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02431 - - gmx:100776824 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02431 17 42280166 42281029 Gma17g02431 17 42280166 42281029 ECH
Gma17g02431 17 42280166 42281029 Gma14g00602 14 5880363 5881214 GST
Gma17g02431 17 42280166 42281029 Gma04g00266 04 2335103 2335840 PCT
Gma17g02431 17 42280166 42281029 Gma06g00251 06 2240520 2242870 PCT
Gma04g00266 04 2335103 2335840 Gma17g02431 17 42280166 42281029 PCT
Gma06g00251 06 2240520 2242870 Gma17g02431 17 42280166 42281029 PCT