Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02402 ATGAGCTGGAGAACCCTAGCTTCCACTTCAAGACACACTTTCAAGAGACTCAATGCAATCCTACGATCCCCTTCCACCACCATCCCTTCTTCACGCGCCTCCTCCTCACTCTTCCTCCACGTGCCGTTCTCCACCACCACCCTACATTCCCTGCCACAACCCACCAACGCCCTCATCGACCCTAAACTCCTCGCTCCGCAAAACGACGCCGTCAACAACAACGACGACGAAACCACGAACGAGTTCTTATCTCGATTCGTGTGGATAATGCGGAAGAAGGTGAAGGAAGCGTACCCTGACTCCGACAAGCCCACCGTCGACGGCATGCTCGTCGCCATCGTCGAGATGGTCGTCTCGGAGATGGAAAAGGGTAGCATCGGAACGACGTCGTCGTTGTTTTGTTCTGCTGATTTCAGCGAGGATTTGTGGAGAACGGTGTGGGAGGTGAGCAGTCTGGTGCTGGAGGACATGAACAAGGAGATAAAAAAAGAGAAAATGAAGAGCTTCTTGCAGTGCGAGGAGGTTAAGGAGATGTGTAGATTCGCCGGAGAAGTCGGCATTCGGGGCGATTTGCTCAGGGAGCTTAGGTTCAAGTGGGCACGTGAGAAGATGGAGGAACATGAATTCTATGAGGGTTTGGAGAGATTGAGAGAAGAGGCACGAAGTGAGGGCAATGGAATTGGTGTTATTACTGAGAAGAAGGAGAAGGTGAAAGAGAAGGTTGTTGTTGGACTTCCCAAGAGGAGAGGGAACATAAGGTACAAGATCTATGGGCTTGATCTCTCGGATTCCAAGTGGGCACAAGTGGCTGATAGGATACATGAGGCCGAGCAGGTGTTTTGGCCGCAGGAGCCGAAGCCAATTACCGGGAAAGCAAAGATTGTTATCGCCAAGATTCTGTCCTCGAAGGAGGAGGATGACGATGGTTTGCAAAGCCTGTTGGCTGAGTGGGTGGAGCTTGTGCAACCTAGCAGGGTGGAATGGATGGATTTGCTCGACAAATTGAAAGAGCAGAATCATGGTTTGTACTTGAAGGTGGCTGAAATGGTATTGGCTGAAGATTCTTTCCAAACAAATGTATCTGACTACTCTAGGCTTATTGATATCTATGCTAAAGAGAACCGCTTTGATGATGTTGAGAGAATGTTAAAGAAACTGAATGAAAATGGTCTACAAGTAGATGCTTCAATAGCCAGTACTTTGGTCCTCATGTACTGCAAGGGAGGCAATCTTGCACGTGCAACTGAAGCATTTGGAGTCTTGACAAGCCTGGGCTTCCAACCAGATGCACATGTCTACAACTCAATGATCATGACATTTGTGAATAATGGCCAGCCTAAGTTGGGCGAGAAATTGATGAGGGACATGGATGATAGACTTATTACAATCACAAAGGACATATACATGGCATTGCTCCGTTCTTATTCTCAACTTGGTGATGTTGCAAGCGCTGAACGAATTTCAACAACTATGCAATTTGCAGGAATCCAGCAGAGTACGGATAAGGAGACATGCACCCTGCTTGTTGAGGCATATGCACTTGCCAGTAACCCTGATCAGGCAAGAAGCCATTTTGACTGCATGATAAAATCTGGGCATCAGCCTGATGATAGGTGCACTGCTAGCATGATTTTGGCTTACGAGAAGAAAAACGACTTGGACAATGCTTTAAATCTTCTTTTGGAGTTAGAAAAGGATGGGTTTGAGCCTGGGGTTGCCACTTATTCTGTTCTTGTGGACTGGTTGGGTAAGTTGCAGCTTGTTGATGAGGCTGAGCAGCTTTTAGGCAAAATAGCTCTGCTGGGTGAGGCTCCTCCCTTTAAGCTTCAAGTAAGTCTTTGTGATATGTATGCAAGGGCTGGAAATGAGAAAAAAGCCCTTCAAAGTCTAGGCGTTCTGGAAGCTAGGAAGGATGAATTAGGTCAAGCTGAGTTTGAGAGAATTATAAGTGGCCTTATTGATGGTGGGTTTCAGAAGGATGCACAAAGAATATGTCAGATCATGGAGGCACAGGGTTTTGATGCATCAAGGGTTAAGTTTAAACTTTCGAAACCTGTCTCCAGAGCACCGAGTTTGAGATAG 2082 0.4702 MSWRTLASTSRHTFKRLNAILRSPSTTIPSSRASSSLFLHVPFSTTTLHSLPQPTNALIDPKLLAPQNDAVNNNDDETTNEFLSRFVWIMRKKVKEAYPDSDKPTVDGMLVAIVEMVVSEMEKGSIGTTSSLFCSADFSEDLWRTVWEVSSLVLEDMNKEIKKEKMKSFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEGLERLREEARSEGNGIGVITEKKEKVKEKVVVGLPKRRGNIRYKIYGLDLSDSKWAQVADRIHEAEQVFWPQEPKPITGKAKIVIAKILSSKEEDDDGLQSLLAEWVELVQPSRVEWMDLLDKLKEQNHGLYLKVAEMVLAEDSFQTNVSDYSRLIDIYAKENRFDDVERMLKKLNENGLQVDASIASTLVLMYCKGGNLARATEAFGVLTSLGFQPDAHVYNSMIMTFVNNGQPKLGEKLMRDMDDRLITITKDIYMALLRSYSQLGDVASAERISTTMQFAGIQQSTDKETCTLLVEAYALASNPDQARSHFDCMIKSGHQPDDRCTASMILAYEKKNDLDNALNLLLELEKDGFEPGVATYSVLVDWLGKLQLVDEAEQLLGKIALLGEAPPFKLQVSLCDMYARAGNEKKALQSLGVLEARKDELGQAEFERIISGLIDGGFQKDAQRICQIMEAQGFDASRVKFKLSKPVSRAPSLR 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02402 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Gma17g02402 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Gma17g02402 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Gma17g02402 693 Coils Coil 369 389 - -
Gma17g02402 693 Gene3D Tetratricopeptide repeat domain 499 686 IPR011990 GO:0005515
Gma17g02402 693 Gene3D Tetratricopeptide repeat domain 335 498 IPR011990 GO:0005515
Gma17g02402 693 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 7 687 - -
Gma17g02402 693 Pfam PPR repeat 363 391 IPR002885 -
Gma17g02402 693 Pfam PPR repeat 432 458 IPR002885 -
Gma17g02402 693 Pfam PPR repeat 542 568 IPR002885 -
Gma17g02402 693 Pfam PPR repeat 574 598 IPR002885 -
Gma17g02402 693 Pfam PPR repeat 504 532 IPR002885 -
Gma17g02402 693 PANTHER OS07G0661900 PROTEIN 7 687 IPR044657 -
Gma17g02402 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Gma17g02402 693 TIGRFAM PPR: pentatricopeptide repeat domain 363 394 IPR002885 -
Gma17g02402 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02402 Gma-Chr17 42034444 42037159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02402 326 680 Glycosyltransferase AT1G05670 25.352 4.15e-32 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02402 - - gmx:100794017 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02402 17 42034444 42037159 Gma17g02402 17 42034444 42037159 ECH
Gma17g02402 17 42034444 42037159 Gma14g00634 14 6174228 6176695 GST