Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02367 ATGGGTTGGCTCAGCAGAATTTTTAAAGGCTCAGACCATAATAAGCTTTCGGAAGGGCATTACTATAAAGAGGATGCGGGTTATTACTTGCCATCCACTTCGGGGGTAACAAATGATGCTTGGAACCAGAACCAGAACCAGAACGAGAATGAAGATATTGATCGTGCTATTGCGTTGTCTCTGGTGGAAGAGAGTCGGAGAGCAAACAACAATGTAAATGACTACAGATCACAATTAGAAGAAGATGAACAACTTGCTAGAGCTATAGAACAAAGTCTAAATTTGGAGTCTCCTCCCAGATATGGAAACGAAAATATGTATCAACCACCAATTCAGTATTTCCCCTTGGGGTCCAGGATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTACGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTCATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGATCCAGAAATATTGCCCTACTCATGAACATGATGGTACTCCACGCTGTTGCAGCTGTGAGCGAATGGAGTCACAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTAGATTCTTCTATCATGGATACTAATGAATGCCAACCCCTTCATGCCGATATACAAAGATTTTATGATAGCCTAAATATGAAACTGGACCAGCAAATTCCACTTCTATTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGAGAAGAATGGCCACTATCACATGCCGGAAACCAGAGGACTCTGCCTCTCAGAGGAGCTCAGCACTTTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCGTACAGACCGACTACACGCTGCGATGTGACCGCAATTCTCGTTTTATATGGTCTTCCAAGGTTGCTTACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTTAAAGGTTATCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAATCTGAACTTTCTTCTGCATCAGGCAGCAACTTTGTATCAGCCTCATCCTCATCTGCATCACATACATCTAGAAAAGGTAAAAGACCTCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATATGGTCTACAAAGGACCCTTCACCATATCAGGATGACAGGGACTTTTCCATATTAA 1437 0.4391 MGWLSRIFKGSDHNKLSEGHYYKEDAGYYLPSTSGVTNDAWNQNQNQNENEDIDRAIALSLVEESRRANNNVNDYRSQLEEDEQLARAIEQSLNLESPPRYGNENMYQPPIQYFPLGSRICAGCYTEIGFGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPTHEHDGTPRCCSCERMESQEAGYIALKDGRKLCLECLDSSIMDTNECQPLHADIQRFYDSLNMKLDQQIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTFSRRPRLGTAMDMRAQPYRPTTRCDVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSASSSSASHTSRKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIRMTGTFPY 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02367 478 CDD LIM_DA1 121 173 - -
Gma17g02367 478 Pfam Protein DA1 271 473 IPR022087 -
Gma17g02367 478 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 147 201 - -
Gma17g02367 478 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 80 99 IPR003903 -
Gma17g02367 478 Gene3D Cysteine Rich Protein 116 180 - -
Gma17g02367 478 PANTHER PROTEIN DA1-LIKE 1 478 - -
Gma17g02367 478 PANTHER PROTEIN DA1-RELATED 2 1 478 IPR045218 -
Gma17g02367 478 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 114 146 - -
Gma17g02367 478 Pfam Ubiquitin interaction motif 49 61 IPR003903 -
Gma17g02367 478 Pfam Ubiquitin interaction motif 80 93 IPR003903 -
Gma17g02367 478 SMART uim 48 67 IPR003903 -
Gma17g02367 478 SMART uim 80 99 IPR003903 -
Gma17g02367 478 ProSitePatterns LIM zinc-binding domain signature. 121 155 IPR001781 -
Gma17g02367 478 Pfam LIM domain 121 175 IPR001781 -
Gma17g02367 478 Coils Coil 65 92 - -
Gma17g02367 478 SMART lim_4 120 172 IPR001781 -
Gma17g02367 478 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 48 67 IPR003903 -
Gma17g02367 478 ProSiteProfiles LIM domain profile. 119 179 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02367 Gma-Chr17 41726700 41734093 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma17g02367 DA1-like 3.1e-93 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02367 - - gmx:100783253 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02367 17 41726700 41734093 Gma17g02367 17 41726700 41734093 ECH
Gma17g02367 17 41726700 41734093 Gma14g00671 14 6583054 6591222 GST