LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma17g02287	ATGCCACTACACCATCACCTCTTCTTAGAAGAAACTAAAATGGCACATCGTTACCCAAAACCCCTTCTAGACACCCTCTACTGCTTAGAAGATCACATTCATTGGGAGGAAGAAGAACAAGTAGACTATAATGAGTACAGTAACACAACAACCACAAACACTAATTCCTCCAATGTGGTCTTGTTAGAACACGACCTCTTCTGGGACCACGAGGAGCTACCTTCTCTTCTCGCCAAAGAACACCAAAACCAACTCTCGAATACTCTTCTCCAAAACAACCTCGTTTTAGCCTCATCTCGAGAAGAAGCAGTGGAGTGGATTCTGAAAGTAAATGCTCGTTATTCCTTTTCTACCCTCACTGCGGTTCTCGCTGTTAACTACCTCGATAGGTTCCTCTTCAGCTTCAGATTCCAAaacgacaacaacgacaacaacaacaacaacAATCCTTGGCTCACACAACTATCCGCAGTGGCTTGCCTCTCTCTCGCTGCCAAATTTGAAGAGACCCACGTGCCCCTTTTTATAGACCTCCAAGTGGAGGAGAGTAAGTACTTGTTTGAAGCGAAAACCGTTAAGAGAATGGAAATCTTGGTTCTTTCCACACTTGGGTGGAAGATGAACCCTGTAACACCTCTTTCATTTCTTGATTACATCACAAGGAAACTGGGGTTAAAGGGCTATCTCTGTTGGGAGTTTCTCAGAAGGTGTGAAACCGTTCTTCTCTCTGTCTTTGCAGATTCTAGATTTATGGGTTATCTACCATCTGTGTTGGCTACTGCCACAGTGATGCGCGTGGTCAATACAGTGGAGCCTCGTCTAGGAGTGGAATACCAAGATCAGCTCTTGGGTATTCTTGGAATCGACAAGGAGAAGGTGGAAGAATGCTACAATCTGATGATGGAGGTTGTGTCAGGGTACGATGAGGAAGGAAAACGAACCAAGTTGAAGAAACGCAAGTTAGAGTCGATTATTCCTTGTAGTAGCCAAAACGGCGTAATGGAAGGGTCGTTTAGCTGTGATAGTAGTTCGAATGAGTCTTGGGAGTTAGGTGCATCTTCTGTTTCATCCTCCAGCAAGAAGACTAGAACTCAAGATCAGCTTCTATTGAACCATTCAAACTCATCAGATTTTATAAGCATTCCTCGCTAG	1152	0.4306	MPLHHHLFLEETKMAHRYPKPLLDTLYCLEDHIHWEEEEQVDYNEYSNTTTTNTNSSNVVLLEHDLFWDHEELPSLLAKEHQNQLSNTLLQNNLVLASSREEAVEWILKVNARYSFSTLTAVLAVNYLDRFLFSFRFQNDNNDNNNNNNPWLTQLSAVACLSLAAKFEETHVPLFIDLQVEESKYLFEAKTVKRMEILVLSTLGWKMNPVTPLSFLDYITRKLGLKGYLCWEFLRRCETVLLSVFADSRFMGYLPSVLATATVMRVVNTVEPRLGVEYQDQLLGILGIDKEKVEECYNLMMEVVSGYDEEGKRTKLKKRKLESIIPCSSQNGVMEGSFSCDSSSNESWELGASSVSSSSKKTRTQDQLLLNHSNSSDFISIPR	383

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma17g02287	383	ProSitePatterns	Cyclins signature.	100	131	IPR006671	-
Gma17g02287	383	PANTHER	CYCLIN D3.1 PROTEIN	46	361	-	-
Gma17g02287	383	SMART	Cyclin_C_2	210	342	IPR004367	-
Gma17g02287	383	Gene3D	-	75	298	-	-
Gma17g02287	383	CDD	CYCLIN	99	200	IPR013763	-
Gma17g02287	383	SUPERFAMILY	Cyclin-like	67	208	IPR036915	-
Gma17g02287	383	SUPERFAMILY	Cyclin-like	211	310	IPR036915	-
Gma17g02287	383	PANTHER	CYCLINS	46	361	IPR039361	-
Gma17g02287	383	Gene3D	-	86	208	-	-
Gma17g02287	383	MobiDBLite	consensus disorder prediction	341	368	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma17g02287	Gma-Chr17	40803947	40806018	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma17g02287	22	320	Core Cell Cycle Gene Families	AT4G34160	49.338	2.45e-93	283

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma17g02287	K14505		-	gmx:100804102	737.643

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma17g02287	17	40803947	40806018	Gma17g02287	17	40803947	40806018	ECH
Gma17g02287	17	40803947	40806018	Gma14g00752	14	7699475	7701770	GST
Gma17g02287	17	40803947	40806018	Gma04g00396	04	3411468	3413268	PCT
Gma17g02287	17	40803947	40806018	Gma06g00385	06	3320825	3322570	PCT
Gma04g00396	04	3411468	3413268	Gma17g02287	17	40803947	40806018	PCT
Gma06g00385	06	3320825	3322570	Gma17g02287	17	40803947	40806018	PCT

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