Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02241 ATGCATTTTTTTCAGGCATCTATGGAGAGAAAATATGACAATGCAAATATAGAAGCTGGTGTGGATCTGAAGGTGATGATTGAGGAAATGGAATCCATTCATGTGCCTTCAGTGTTCATCTGCCCAATCTCCCATGAACCAATGCAAGACCCTGTGACCCTTTGTACTGGCCAAACCTACGACAGATCCAACATCCTCAAATGGTTCTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGAGCTTTGGGACGATGTTGTCACTCCCAACAGCACCCTCTCCCACTTGATCCTCACTTGGTTCTCTCAAAAGTACTTGGCCATGAAGAAGAAGCTTGAAGATGTTCAAGGAAGAGCCTTGGAAATCTTGAACACTCTCAAGAAGGTAAAGGGTCAAGCCAGAGTTCGAGCACTTCAAGATCTAAGGCAACTTGTTAGTTCTCATGTCAATGCAAGAAAGACTCTGGAGGAAAATGGTGGTGTTGCTTTGGTTTTCAATTTTTTGGGTCCTTTCACTTCCCATGCTGTTGGGTCAGAAGCTATTGGGATCATTGTGTGTTTGGATTTGAGTTCTGAGGTGAAGAGAAGCCTCATGCATCCTGCTGAGATTTCATTGTTGGTGGATATCATGAATGAGGGAACCATTGAGACCAAAATGAACTGTGCCAAGTTGATTGAGATGTTGTTGATGGAAGGGAACAATGAGGTTGTTTCAAGTTTGAGTCTTTTGGTTGGTTTATTGAGGCTAGTGAGGGATAAGAAACACCCAAATAAAATGGTCTCAATTGGTCTCATATTACTTAAAGCTATAACATGTTCCCATGAATCAGTTAGAAGCTCTTTGATAAGCCTAGGAGCAATTTCTCTATTGGTTGAGCTTTTGCCTAGTTTGAACAATGAGTGCTTGGAGAAAGCACTCTACATTCTTAAGGTGTTGTCAACACTCCAAGAGGGAAGAATGGCTTTGAAGGAATGTCCAAATATCATTCCAAATGTGGTGAAGTTGCTGATGAGAGTCTCAGAGAGGTGTACACAATTAGCATTGTCAATATTGTGGGCTATTTACAAGCTTGCCCCTGAGGAATGTGCCTCACAGGCTGTGGAGGCTGGATTGGCAGCAAAGCTTCTTTTGGTGATTCAGAGTGGATGCAACCCTGGGTTGAAGCAAATGTCTTCTGAGTTTTTGAAAATGTGCAGCCTGAATTACTCTACTAGCATCTTGGTTTCCAAGTGTATGCTCACCACAACAATACAATGA 1260 0.423 MHFFQASMERKYDNANIEAGVDLKVMIEEMESIHVPSVFICPISHEPMQDPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDVVTPNSTLSHLILTWFSQKYLAMKKKLEDVQGRALEILNTLKKVKGQARVRALQDLRQLVSSHVNARKTLEENGGVALVFNFLGPFTSHAVGSEAIGIIVCLDLSSEVKRSLMHPAEISLLVDIMNEGTIETKMNCAKLIEMLLMEGNNEVVSSLSLLVGLLRLVRDKKHPNKMVSIGLILLKAITCSHESVRSSLISLGAISLLVELLPSLNNECLEKALYILKVLSTLQEGRMALKECPNIIPNVVKLLMRVSERCTQLALSILWAIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPGLKQMSSEFLKMCSLNYSTSILVSKCMLTTTIQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02241 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 117 IPR013083 -
Gma17g02241 419 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 418 - -
Gma17g02241 419 PANTHER WDSAM1 PROTEIN 13 418 IPR045185 GO:0061630
Gma17g02241 419 CDD RING-Ubox_PUB 39 81 IPR045210 -
Gma17g02241 419 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Gma17g02241 419 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Gma17g02241 419 SUPERFAMILY ARM repeat 133 402 IPR016024 -
Gma17g02241 419 Gene3D - 120 410 IPR011989 -
Gma17g02241 419 Pfam U-box domain 35 105 IPR003613 GO:0004842|GO:0016567
Gma17g02241 419 Coils Coil 139 159 - -
Gma17g02241 419 SUPERFAMILY RING/U-box 30 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02241 Gma-Chr17 40297630 40298889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02241 21 419 U-box Gene Family AT3G49810 63.840 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02241 - - gmx:100776107 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02241 17 40297630 40298889 Gma17g02241 17 40297630 40298889 ECH