Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02222 ATGCACGATCGTCTTGTTATGCTTAAACAAGCCCAGAGTATCAACCCAGTTCTGATACCTGCTGATTTTTGTTGTCCTCTTTCTCTAGAGTTGATGACTGATCTCGTGATTGTGGCATCAAGGCAAACGTATGAACGAGCTTTCATGAAGAATTGGATTGAAGAGGATCTTACTGTTTGTGCAAAGATAGAGGTACTCGATCCactcttcctcttccaaatAGCATTGGATGATAGAAACTCATCATCACTAAACTTGAAGGAGACAGAGCTGAGGCTTGGCCTCCCTGGTTGCGAGTCTCCAGAGAGAAAATCAGTACCCATGTCATGTAAGAGTTCATATTTTCAGCCATGGAGTGGGAATGTAATTTGCATGGATGGTGATTTCTCAAGACATGAGAACAACATGCAAAGATACAGTGACAAGACTTTAGCTACTGCCTATGAAGCTTTGCTTCAGAAATTCTCAAAGTTGGATGAAGATCCTATCCTAGGAATGCTTAATTGTAAACTTCATGTGAACTTAAGAAAAAGTGTTAGAGAAGCAATCTCATCTCTGCAGTAA 564 0.3936 MHDRLVMLKQAQSINPVLIPADFCCPLSLELMTDLVIVASRQTYERAFMKNWIEEDLTVCAKIEVLDPLFLFQIALDDRNSSSLNLKETELRLGLPGCESPERKSVPMSCKSSYFQPWSGNVICMDGDFSRHENNMQRYSDKTLATAYEALLQKFSKLDEDPILGMLNCKLHVNLRKSVREAISSLQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02222 187 PANTHER OS01G0253100 PROTEIN 87 177 IPR045271 GO:0004714|GO:0006468
Gma17g02222 187 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 87 177 - -
Gma17g02222 187 SMART Ubox_2 22 85 IPR003613 GO:0004842|GO:0016567
Gma17g02222 187 Pfam U-box domain 19 55 IPR003613 GO:0004842|GO:0016567
Gma17g02222 187 SUPERFAMILY RING/U-box 13 58 - -
Gma17g02222 187 ProSiteProfiles U-box domain profile. 18 60 IPR003613 GO:0004842|GO:0016567
Gma17g02222 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 65 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02222 Gma-Chr17 40000317 40001556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02222 1 62 U-box Gene Family AT2G23140 61.290 1.31e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02222 - - gmx:100305413 144.821