Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02199 ATGGAGAACAACATGTACAGTGCTCGACTAGACATGGCTGGCCGAAATTCTACCGGCATAGATGAAATTGCTCGCCATTTAGCACCAAAGCCACTGATTCATTGCTATTCATTTGACCTCAATAACCAAAACCATATTATAAATGGAATTCCAGTGCTTGCTGGAGAGCAAGGTGAACCTGCAAATGATGTCCATGTTGAAGGTTGCTTCTTAAACCCTGCTAGTATTGCGGATTCAAATTCATTTGTTACATCACAAGGAAAGACTATTGTAGGAGATGCCTCAAATCAAATTAACAACAATGATTTTCAAGAGCATTTAGTTGGAGGAAGGCCAATTGCTTCTGCTTCACTTTCTGCTGCTAGAATTGGCCTTCAAGCAAATTTAGAGAGTTCAGAAGCTTTGCCTTATTCAATGTGTTCATTGGAGGCATTAGGACCATATCTATTCAATAATTGGCAGGGCACATCAAACCCTTTGCCTGCAACTTTTGGTGATCATCATCATGCCTACGATGAATTATCCAGTATTGGTAAGTGGAATGTGAACAAGATTCTGAGAGCTCCAGAGGCTGATGGGACTGAGATCCTGGCCTATTCATCCATAGGAAGCCTGGTTCAAAATGGATGGACATCATCAAATGTTGCAAACTTGGCCAATTTTGCCTACAATTCCCCTCATTGTAGTAATGAGCTATCACTAAGTCTTGCAAGATCTCCTCAAACTACTGGTCAGTGCTCAGAGATGAGCTGCTCCGGCGCATCACATAGCATGAATGGAACGAGGTCAGGCTTGGAGCAATCCTCCTGCAGCAGTAAGGAACTGTGTATGAGATTAGGCTCTAACAAACATGTCCAGTTTTCATCAGCAATATTAGGGTCCAGATTTCTTGTTGGAATTCAAGAGATACTTGCTCAAATTGCAACATATTCATTTGAAAATGTGGAACAGATAAATTGCTCAGCTGCTGGTGTTAGAGCAGGAGGAGATAAGTCAGCTTCAGCTTTCACACCAAAGAGAACGGTAGAGAATAATCAAAATGCATCCATGTTTGGAGCACATGTAGAAGAATCTCCATTGGAAGGACTTGCAACTGAATCAAACAAATCCCAACTTCTCATGCTTCTTCAGCTGGTGGACAATGGATATAGTCAATGTTTGGATGAGATTCATACTGTGGTATCTGCATTCCATGCTGCTACTGAACTGGATCCACACATGCATGCACATTTTGCGCTTCAAACGATCTCTCTCTTATACAAGGACTTGCGAGAGCGGATTAGCAATTGTATTCTTGCCATGGGACCGGATTTTAACAGCTTGTGTTCAGAAGAGGAGAAGGAATGGTCTCTTGAAACATCATTCATTCAAAAGCAATGGGCTCTCCAACAGCTAAAAAGAAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAAAGATCTGTCTCCGTACTACGCACTTGGATGTTTCAGAATTTCCTCCATCCGTATCCAAAGGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACGCGAAGCCAGGTATCCAATTGGTTTATCAATGCACGTGTTCGACTGTGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTAGAAATGAAGAAGGAATGGAGATCACTCAAAGAACCAGGATAAGCATGAAAAATCAAATGTTGAATATCAATTGA 1716 0.4167 MENNMYSARLDMAGRNSTGIDEIARHLAPKPLIHCYSFDLNNQNHIINGIPVLAGEQGEPANDVHVEGCFLNPASIADSNSFVTSQGKTIVGDASNQINNNDFQEHLVGGRPIASASLSAARIGLQANLESSEALPYSMCSLEALGPYLFNNWQGTSNPLPATFGDHHHAYDELSSIGKWNVNKILRAPEADGTEILAYSSIGSLVQNGWTSSNVANLANFAYNSPHCSNELSLSLARSPQTTGQCSEMSCSGASHSMNGTRSGLEQSSCSSKELCMRLGSNKHVQFSSAILGSRFLVGIQEILAQIATYSFENVEQINCSAAGVRAGGDKSASAFTPKRTVENNQNASMFGAHVEESPLEGLATESNKSQLLMLLQLVDNGYSQCLDEIHTVVSAFHAATELDPHMHAHFALQTISLLYKDLRERISNCILAMGPDFNSLCSEEEKEWSLETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRTWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEEGMEITQRTRISMKNQMLNIN 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02199 571 CDD homeodomain 472 533 IPR001356 GO:0003677
Gma17g02199 571 Pfam Homeobox KN domain 489 528 IPR008422 GO:0003677|GO:0006355
Gma17g02199 571 Gene3D - 475 555 - -
Gma17g02199 571 Pfam Associated with HOX 291 428 IPR006563 -
Gma17g02199 571 ProSiteProfiles 'Homeobox' domain profile. 469 532 IPR001356 GO:0003677
Gma17g02199 571 SUPERFAMILY Homeodomain-like 474 541 IPR009057 -
Gma17g02199 571 SMART prehox3 285 429 IPR006563 -
Gma17g02199 571 PANTHER HOMEOBOX PROTEIN ATH1 10 567 - -
Gma17g02199 571 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 567 - -
Gma17g02199 571 SMART HOX_1 472 536 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02199 Gma-Chr17 39700949 39703872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02199 230 545 Homeobox Transcription Factor Family AT4G32980 54.573 2.39e-102 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma17g02199 POX 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02199 - - gmx:100812648 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02199 17 39700949 39703872 Gma17g02199 17 39700949 39703872 ECH
Gma17g02199 17 39700949 39703872 Gma04g00469 04 4195734 4197885 PCT
Gma17g02199 17 39700949 39703872 Gma06g00463 06 3958789 3960808 PCT
Gma04g00469 04 4195734 4197885 Gma17g02199 17 39700949 39703872 PCT
Gma06g00463 06 3958789 3960808 Gma17g02199 17 39700949 39703872 PCT