Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02188 ATGACTCCTTATTCTCTGAACCCACCAGGCCCTTCCATACAAGCTGGTCAAACCCAACTCTTCAATATTTCTCCTAATAATCAGGATTGCCGTACCATTTTTAACATATTTGATCCAAGGAAAACCAGGATAGAAATTGGAGGGTTAAGAGATAATTATCATCAACAGGCAAGATCATTTATTCAATTCCTTTTCTGTATACTATATGATCAAAATTTATCATTAGATGACAAGATGATGGTATTGCATGATGGATCATCAAGCAACAGCAACAAGTCGTCCTTCAATAATAATATTTCACCTGAGCCAGTAGTTGTTATGGTTGATCCAATTATAAGCAGCGCATGTGATCAGCAGCATAATTTACCCTATGAGGAAGAGAGTAAAAATATTGATGATCACGGGTCTGGGAACAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAAATGATGAGACCGAGTATGAGTCCAACCACTGACAAAGCAATCAATTCAGGGCTCGAAAGCAGCAGCAGCAGGTACAGCCAAAGAAGCCTTTGTAACAACAACGCCAGTAGCACCACTAGGGTTTGTTCGGATTGTAATACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCTCTATGCAATGCCTGTGGCATTAGACAGAGGAAGGCAAGAAGGGCAATGACAAAAGCTACAAGTGGTTTGATCACTCCCATAACATGTGCAAAGACCAGAGTGCACAACAAGGAAAAGAAGTCTCGTGCAAACCATTTTGCACAGTTCAAGAACAAGTACAAGTCCACAACCACAACTAGTGCAGGCTCATCTGAGGGAGTGAGGAAGCTTGAATATTTAAAGGACTTCGCCATAAGCTTGAGGAGTAACAACTCTGATTTTGAACAAGGGTTTCCACGGGATGAAGTAGCTGAAGCGGCATTGCTTCTGATGGACTTGTCTTGTGGTTTTGTCCACTTATAA 978 0.4141 MTPYSLNPPGPSIQAGQTQLFNISPNNQDCRTIFNIFDPRKTRIEIGGLRDNYHQQARSFIQFLFCILYDQNLSLDDKMMVLHDGSSSNSNKSSFNNNISPEPVVVMVDPIISSACDQQHNLPYEEESKNIDDHGSGNKWMSSKMRLMKKMMRPSMSPTTDKAINSGLESSSSRYSQRSLCNNNASSTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMTKATSGLITPITCAKTRVHNKEKKSRANHFAQFKNKYKSTTTTSAGSSEGVRKLEYLKDFAISLRSNNSDFEQGFPRDEVAEAALLLMDLSCGFVHL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02188 325 Gene3D - 187 269 IPR013088 GO:0006355|GO:0008270
Gma17g02188 325 Pfam GATA zinc finger 192 225 IPR000679 GO:0006355|GO:0043565
Gma17g02188 325 SMART GATA_3 186 237 IPR000679 GO:0006355|GO:0043565
Gma17g02188 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 226 - -
Gma17g02188 325 ProSitePatterns GATA-type zinc finger domain. 192 217 IPR000679 GO:0006355|GO:0043565
Gma17g02188 325 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 63 324 - -
Gma17g02188 325 CDD ZnF_GATA 191 228 IPR000679 GO:0006355|GO:0043565
Gma17g02188 325 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 63 324 - -
Gma17g02188 325 ProSiteProfiles GATA-type zinc finger domain profile. 186 222 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02188 Gma-Chr17 39559592 39562353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02188 139 324 C2C2-Gata Transcription Factor Family AT4G26150 37.143 1.47e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma17g02188 GATA 3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02188 - - gmx:102664611 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02188 17 39559592 39562353 Gma14g00860 14 9234483 9237513 GST
Gma17g02188 17 39559592 39562353 Gma04g00475 04 4229132 4236804 PCT
Gma04g00475 04 4229132 4236804 Gma17g02188 17 39559592 39562353 PCT