Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02178 ATGGAGAGAATCAGAGTGAAGGAGGAAGAAGCAATGACATGTGGAGGTGGTGGTTCATCATCTTCAAGCTTTATTTCTCCACAGGCACAGCCCATGGAAGGGTTGCACGAGGTGGGTCCCCCTCCGTTTCTGAGCAAGATCTTTGACATGGTGGAAGATCCTTCCACGGATTCCATTGTTTCATGGAGCATGGCTCGCAACAGCTTTGTCGTGTGGGACTCTCACAAGTTTTCTGCTCACATTCTGCCTCGTTACTTCAAGCACGCCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCTGATAAATGGGAATTTGCAAACGAAGGTTTTCTGGCAGGACAAAGGCACTTATTGAAGACCATAAAGAGAAGAAGAAATGTGTCACACAGCAATCAACAAAAAGGAGGAAGTGGAGCTTGTGTTGAAGTGGGGAAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGGGATAGAAACATTTTGATGGCAGAAATTGTGAGATTGAGGCACCAACAACTGAACTCAAGGGACCAATTAAGTGCCATGGAGGCAAGAATGCAAGCCACAGAGAAGAAACAGCAACAAATGATGAGTTTCTTAGCAAAAGCACTAAGCAATCCATCTTTCATGCAGCAATTAGTCCACAAAACCCCCCAAAGCAGAGAAGTGTTGTTGGGTGTTGAAATCAATAGGAAAAGGAGACTACCTGCTTGTCCAAGTGTGGAGAACTTGCAACAAGATAATCAAGATTTGGCAACTATGGAGACTGATATGGACACTTTTTTCGCACCGGCTTATGATAATGAATTCGGTAATGAAATCGATGAGCCTGCATCGATTTTGGTTGAGGATTCAATCTTGGAGGACTTTCTCAACAAAGACTTGATTACTGGGAATCCGGAGGATGAAGTTATAATTGGTGATTGCACCCAAGTCGATGTGCCGATGGAGGATTTGGTAGCAAACCCTGATGATTGGAGTGAGCAATTGCAGGACCTTGTGGATCATATGGACTACCTAGGATCCAAACCATAG 1062 0.4444 MERIRVKEEEAMTCGGGGSSSSSFISPQAQPMEGLHEVGPPPFLSKIFDMVEDPSTDSIVSWSMARNSFVVWDSHKFSAHILPRYFKHANFSSFIRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRNVSHSNQQKGGSGACVEVGKFGLEGELERLKRDRNILMAEIVRLRHQQLNSRDQLSAMEARMQATEKKQQQMMSFLAKALSNPSFMQQLVHKTPQSREVLLGVEINRKRRLPACPSVENLQQDNQDLATMETDMDTFFAPAYDNEFGNEIDEPASILVEDSILEDFLNKDLITGNPEDEVIIGDCTQVDVPMEDLVANPDDWSEQLQDLVDHMDYLGSKP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02178 353 MobiDBLite consensus disorder prediction 1 24 - -
Gma17g02178 353 Coils Coil 153 180 - -
Gma17g02178 353 Gene3D - 36 133 IPR036388 -
Gma17g02178 353 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Gma17g02178 353 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02178 353 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 267 IPR027725 -
Gma17g02178 353 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02178 353 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02178 353 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02178 353 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02178 353 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02178 353 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 21 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02178 Gma-Chr17 39429823 39432794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02178 30 353 HSF AT2G26150 56.667 7.21e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma17g02178 HSF_DNA-bind 1.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02178 K09419 - gmx:100820298 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02178 17 39429823 39432794 Gma14g00877 14 9531460 9534352 GST
Gma17g02178 17 39429823 39432794 Gma04g00481 04 4285701 4287612 PCT
Gma04g00481 04 4285701 4287612 Gma17g02178 17 39429823 39432794 PCT