Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02176 ATGGGTGCATCTGGAAAATGGGTAAAAGCATTAATCGGACTCAACAACAAGAGCGACCTTGGTGGGAAGAAGAAGAAATGGAGGCTGTGGAAGAGTTCTTCTGCGGGAGAAAACAGATCTCAAGGCAACGACTATGCTAGTAGTGTGGCTTCGGATTCTTTCAATTTTGCTGTGGCCACTGTGGTCAGAGCTCCACCCAAGGATTTCAAACTCCTCAAGCAAGAATGGGCCGCCACCCAAATCCAAACCGCTTTCCGTGCCTTCTTGGCAAGAAGGGCATTGAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTTGTAAGGGGTAGACTAGTGAGGAAGCAGGCTGCGGTCACATTGAGGTGCATGCAGGCCTTGGTTCGTGTCCAGGCACGTGTAAGAGCTCGGCGCGTGCGAATGTCCATTGAGGGGCAAGCAGTGCAGATCATGCTCAATGAACGCCGCACCAAAGCTGAGCTCATCAAACAAGCTGAGGAAGGATGGTGTGATAGCAAAGGATCATTGAAAGATGTCAAGACAAAATTACAGATGAGGCAAGAAGGAGCTTTCAAGAGGGAGAGAGCAATTGCATACTCTCTTGCCCACAAGCAATGGAGATCAACCCCCATCTCTAATTCAAGAGCAAACGCCGCTCTCAACAATCACGAGATGGACAAGGCGAACTGGGGATGGAGTTGGTTGGAACGTTGGATGGCAGCTAAACCATGGGAGAGTAGATTAATGGAACAAACCCATCATGCTGATGCCACAGAGAAGACCCCTCCTCCTCCTCCACCAAAGAAATGTGTTGACTCCTCCAATTCAAAAACATCAGAACTATGCAATATTAAAATCAGAAAGAACAATGTCAGCACAAGGATTTCTGCTAGACCTCCCCATATTGGACAAGCTACTCGCTTGTCATCGAGTCCAAGTTCTGAGTTTCACTATGATGAGAGCTGCTCTAATTCATCCTCAATCTGCACATCTACAACTCCAATACCTTGTGACAGGACAGAGGATAGTAACAACTCTAGGCCTAGTTACATGAACCTCACCGAGTCAACCAAGGCAAAGCAGAAAACCAGCAATCATCAGTACAATAGATCTCAGAGGCAGCAGTCCATGGATGAGTTCCAGTTTCTCAAAAGAACAGCAGTTTTCTCTAATGCTTCTGACCCTTCAACCAACTTTTCTAGGCCACTTTACCTACCAACCTACATGGATAAGAGTTCACGGTGA 1242 0.4742 MGASGKWVKALIGLNNKSDLGGKKKKWRLWKSSSAGENRSQGNDYASSVASDSFNFAVATVVRAPPKDFKLLKQEWAATQIQTAFRAFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQIMLNERRTKAELIKQAEEGWCDSKGSLKDVKTKLQMRQEGAFKRERAIAYSLAHKQWRSTPISNSRANAALNNHEMDKANWGWSWLERWMAAKPWESRLMEQTHHADATEKTPPPPPPKKCVDSSNSKTSELCNIKIRKNNVSTRISARPPHIGQATRLSSSPSSEFHYDESCSNSSSICTSTTPIPCDRTEDSNNSRPSYMNLTESTKAKQKTSNHQYNRSQRQQSMDEFQFLKRTAVFSNASDPSTNFSRPLYLPTYMDKSSR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02176 413 MobiDBLite consensus disorder prediction 250 275 - -
Gma17g02176 413 Pfam IQ calmodulin-binding motif 98 115 IPR000048 GO:0005515
Gma17g02176 413 Pfam IQ calmodulin-binding motif 76 95 IPR000048 GO:0005515
Gma17g02176 413 ProSiteProfiles IQ motif profile. 98 125 IPR000048 GO:0005515
Gma17g02176 413 PANTHER IQ-DOMAIN 5-RELATED 1 412 - -
Gma17g02176 413 MobiDBLite consensus disorder prediction 290 378 - -
Gma17g02176 413 ProSiteProfiles IQ motif profile. 74 102 IPR000048 GO:0005515
Gma17g02176 413 SMART iq_5 73 95 IPR000048 GO:0005515
Gma17g02176 413 SMART iq_5 96 117 IPR000048 GO:0005515
Gma17g02176 413 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02176 Gma-Chr17 39400123 39402777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02176 1 410 IQD Protein Family AT2G26180 54.233 1.08e-133 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02176 - - gmx:100805149 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02176 17 39400123 39402777 Gma14g00880 14 9553099 9555653 GST
Gma17g02176 17 39400123 39402777 Gma04g00483 04 4306130 4308544 PCT
Gma17g02176 17 39400123 39402777 Gma06g00475 06 4055860 4057924 PCT
Gma04g00483 04 4306130 4308544 Gma17g02176 17 39400123 39402777 PCT
Gma06g00475 06 4055860 4057924 Gma17g02176 17 39400123 39402777 PCT