Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02154 ATGGGGTGGGGTCACCTCGGAAGACATGGCTCAGATTCCGGCGACGGCGCGGTTGCCGGTCCAAGCACCTCCTCCACCGAGCCACGGCGGTTCCCTCTCGCAGCTCAGCCGGAAATTATGCGCGCCGCCGAGAAGGACGATCAATACGCCTCTTTCGTTTACGAAGCCTGTCGCGACGCATTTCGCCACCTCTTTGGTACCAGAGTTGCAGTGGCTTACCAAAACGAGACGAAACTTTTAGGGCAGATGCTTTACTATGTTCTCACTACTGGCTCGGGACAGCAAACCCTGGGAGAGGAATACTGCGACATTACTCAGGTTGCTGGACCTTATGGACTTCCTCCTACTCCTGCGAGGCGTGCTCTTTTCATTGTATATCAGACTGCTATTCCATATATCGCAGAACGAATTAGTTCTAGAATTGCTTCGCAAGGCATTGTCCTTACTGACTCAGAGTTTGCTGAGGGTTTTGGTGAAAATGCCCACAGTAGCCATAGTTCTCAGATTTCTGACGCCAGTCTTTCATCCTCGTCGGGACAATCTGTTACTACTCTGTCAAGGTTGAAGGGTAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTCCGTGAGTTGTTGCAGTTGGTTCTCCGTGCTAATCTCATGTTATTCTACTTTGAAGGCCTCTATTATCATATACCCAAACGTGCTGCAAGCATTCGTTATGTATTTATTGGAAAAGCATCAAATCAAAGACCCAGATACCAAATACTAGGAGTATTTCTGTTGATTCAACTTTGTATACTAGCTGCTGAAGGGCTGCGTCGAAGAAATTTTACTTCAATTGCTGGTTCAGTTCATCAAGCATCCTTCACAAACCATGATAGATCAGCAGGGCATGGTTTGCCTGTTTTAAATGAAGAGGGTACTTTGGCAACTCCAGATATTGACAAAGGAAGTTGGGTCTCTGAATCTTCATCTTCTGAGTATCATGCAACTAGTGGGGTTAGCAAGTGCACACTTTGCCTGAGTAATCGTCAGCACCCAACTGCTACTTCCTGTGGTCATGTATTCTGCTGGAACTGTATCACGGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGTCGCACGCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCGGACTTCTAG 1185 0.4726 MGWGHLGRHGSDSGDGAVAGPSTSSTEPRRFPLAAQPEIMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQTAIPYIAERISSRIASQGIVLTDSEFAEGFGENAHSSHSSQISDASLSSSSGQSVTTLSRLKGKLSAFWLHLVQRWPTMLPFVRELLQLVLRANLMLFYFEGLYYHIPKRAASIRYVFIGKASNQRPRYQILGVFLLIQLCILAAEGLRRRNFTSIAGSVHQASFTNHDRSAGHGLPVLNEEGTLATPDIDKGSWVSESSSSEYHATSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02154 394 ProSiteProfiles Zinc finger RING-type profile. 340 378 IPR001841 -
Gma17g02154 394 Pfam Pex2 / Pex12 amino terminal region 46 277 IPR006845 -
Gma17g02154 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 391 IPR013083 -
Gma17g02154 394 MobiDBLite consensus disorder prediction 159 178 - -
Gma17g02154 394 SUPERFAMILY RING/U-box 339 383 - -
Gma17g02154 394 MobiDBLite consensus disorder prediction 1 31 - -
Gma17g02154 394 SMART ring_2 340 377 IPR001841 -
Gma17g02154 394 PANTHER PEROXISOME BIOGENESIS FACTOR 10 25 391 - -
Gma17g02154 394 ProSitePatterns Zinc finger RING-type signature. 355 364 IPR017907 -
Gma17g02154 394 CDD RING-HC_PEX10 339 378 - -
Gma17g02154 394 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 25 391 - -
Gma17g02154 394 Pfam Zinc finger, C3HC4 type (RING finger) 339 383 - -
Gma17g02154 394 MobiDBLite consensus disorder prediction 160 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02154 Gma-Chr17 39091956 39101878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02154 307 390 C3H Transcription Factor Family AT3G58030 31.395 5.78e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02154 K13346 - gmx:100816042 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02154 17 39091956 39101878 Gma17g02154 17 39091956 39101878 ECH
Gma17g02154 17 39091956 39101878 Gma14g00896 14 9987045 9990979 GST