Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02149 ATGGACGCAGGTTACAATCCTCGTACCGTCGAAGAGGTCTTTAGGGATTTCAAGGGTCGCAGAGCTGCTTTGATTAAAGCCCTCACCACTGATGTTGAAGAGTTCTACCAGCAGTGCGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCAAGTGAGCATTGGGAAGTCAATCTGCCAGCTGAGGAGGTGCCCCCTGAGCTTCCAGAGCCAGCATTGGGCATTAACTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCTGTGCACAGTGATGCTTGGTTGCTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGACAAGGCTGACAGGAAGCGACTATTTAATATGATAAATGATCTTCCGACAATATTTGAGGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCGAATCATAGCAGTACCAAGTCGAAGTCAAACTCTAAGCGCGGTTCTGAATCAAAGTACACAAAAGCAATGCAATCCAAGGACGAGGACGATGAAGGTGTGGGTGTGGAAGAGGAAGACGAAGATGAACATGGAGAGACTTTGTGTGGGGCATGTGGAGAGAGTTATGCTGCCGACGAATTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGAAAGTGCGTGAAGATTACCCCTGCAAGGGCCGAGCATATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGA 756 0.4683 MDAGYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEHWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSTKSKSNSKRGSESKYTKAMQSKDEDDEGVGVEEEDEDEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02149 251 MobiDBLite consensus disorder prediction 159 179 - -
Gma17g02149 251 Pfam Alfin 9 137 IPR021998 GO:0006355|GO:0042393
Gma17g02149 251 Pfam PHD-finger 198 247 IPR019787 -
Gma17g02149 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Gma17g02149 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Gma17g02149 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Gma17g02149 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Gma17g02149 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 251 - -
Gma17g02149 251 CDD PHD_AL_plant 197 247 IPR044104 -
Gma17g02149 251 SMART PHD_3 197 245 IPR001965 -
Gma17g02149 251 MobiDBLite consensus disorder prediction 143 191 - -
Gma17g02149 251 PANTHER CPG BINDING PROTEIN 4 251 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02149 Gma-Chr17 38998822 39003831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02149 3 250 Alfin-like Transcription Factor Family AT3G42790 79.116 2.29e-128 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gma17g02149 Alfin 2.9e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02149 - - gmx:100797908 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02149 17 38998822 39003831 Gma17g02149 17 38998822 39003831 ECH
Gma14g00902 14 10143792 10149051 Gma17g02149 17 38998822 39003831 ECH
Gma17g00486 17 3998308 4002516 Gma17g02149 17 38998822 39003831 ECH
Gma17g02149 17 38998822 39003831 Gma14g00902 14 10143792 10149051 GST