Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02104 ATGGAATCGGAGGATTTGGTGAAGCAGGAATTGGAGGAATTGCAGAAACAATTGGGGAAGAAGCTAAAATTTGAAGCCTCTATTTCGTCTCTAAAATCTCTTCTCCAACGCACTTACCCATCAGCTTCCCCAGCGCTTCGCAAATCCTTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACAGCACCAGGTTTCTGGAATGCTGGACTGGGCCTTTTTGAGCAGGCTCATTTGCTTGTTTCTGAACCTTCTGAGAAGGAGAAGTTGAAGGCTTGCATTGCTCAGGCCAGGGAACATTTGCATCTAGAAGATAACCCATCACAAGCTTTACAACCTTCAGATAATCAGGCAAACAGAGGATATCTTTTTGAGGGGCACCTTACGGTTGATCCTGAGCCACCACAGCCTCAATGGTTGGTGCAGTCAAACCTCTTGACAACAGCTGCTACACTCTTTGCTGCTGAATCCTCTCAAGCTCCAGCAGCAAATGAAACCACTCAAGAGGATGCCGCAAATATGCTTCAAGATCTTCTAAATAGATTGGAAGAAGTTGTGCCCTTGATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAGGTTGTGGCAAATCTTCCGGTCATTACTCTCACAGAGGAAATCCTGGCTAATTTGGGGAAAGATGCAGAGTGTGCTATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAGCGTGAAAAGGAAGCTGAAGAAGAGAGGAAAGGTGCTGAAAATGCAATTCGAGGTGGTGAATACATGTATGTTTAA 942 0.4575 MESEDLVKQELEELQKQLGKKLKFEASISSLKSLLQRTYPSASPALRKSFYLVICRVATVLKTRYTAPGFWNAGLGLFEQAHLLVSEPSEKEKLKACIAQAREHLHLEDNPSQALQPSDNQANRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFAAESSQAPAANETTQEDAANMLQDLLNRLEEVVPLMVDGGPVAPKAPPASKEVVANLPVITLTEEILANLGKDAECAICRENLVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02104 313 MobiDBLite consensus disorder prediction 294 313 - -
Gma17g02104 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 307 - -
Gma17g02104 313 SUPERFAMILY RING/U-box 227 280 - -
Gma17g02104 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 280 IPR013083 -
Gma17g02104 313 PANTHER ABI3-INTERACTING PROTEIN 2-1 7 307 - -
Gma17g02104 313 Pfam Ring finger domain 232 274 IPR001841 -
Gma17g02104 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Gma17g02104 313 SMART ring_2 233 273 IPR001841 -
Gma17g02104 313 Coils Coil 284 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02104 Gma-Chr17 38423226 38426337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02104 7 313 C3H Transcription Factor Family AT5G20910 65.584 1.21e-137 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02104 K16274 - gmx:100800189 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02104 17 38423226 38426337 Gma17g02104 17 38423226 38426337 ECH
Gma17g02104 17 38423226 38426337 Gma14g00970 14 11347012 11350371 GST