Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02089 ATGTCGTCGGTTTACGTTCTAGAGCCTCCGACGAAGGGGAAGGTGGTGGTGAACACTACGCGCGGTCCTTTGGACATTGAGCTGTGGCCGAAAGAGGCTCCGAAGGCCGCGAGGAACTTCGTTCAGCTCTGCCTCGAAAACTATTACGACAACACCATCTTCCACCGCATCATCAAGGACTTCCTCGTCCAAAGCGGCGACCCCACCGGCACCGGCACCGGTGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCACGTCTGAAATTCAAGCACAGAGGAATAGTTGCAATGGCCAATGCCGGAACTCTGAATTCCAATGGAAGTCAGTTTTTCATCACTCTCGACCGCTGTGATTGGCTTGATCGCAAGCATACCATTTTTGGAAAAGTGACGGGAGATACAATGTATAATCTTTTGAGGCTGGGTGAACTTGAAACTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAAAAACTTCAGATTGAAGCTAAAGCTGATACAAAAAATAAAGAGTCAGGGAAAAAAGGCGTAAAAAAATTGAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGAATTGGCATCGGTGAAGCAAAAGATTAAGAGCAGTCACGATGTCTTGAACGATCCTCGTCTTCTAAAGGAAGATACTCTTAATAATGAACTGAGTTCATCAAGAAGAGATATGCAATTATCTGTAAGGGATGCACTTAACTCAAAGAAAGACGAGCCTCAGAAAGATTCAGATGCTGGTAGCATGGCATGTCTTAATTTCAGTGATGACGATGAAGCAGATTTTGATGCAAGAATGCGCATGCAAATACTCAAAAAGAGGAAGGAGTTGGGTGATCTCCCTCCCAAGCCAAAGTTGCGAAATGCAGGAAGGTCCAGTCCAGAGAACCATGATACGTCGTCTGCAGCCAGGTCCAATGCTGTAAGTGTTGATGAGGATCAACCAAAGGTGGAAAAATTGTCCTTGAAGAAAAAGGGAGTTGGATCTGAAGCAAGAGCTGAACGAATGTCTAATGCAGATGCAGATTTGCAACTATTGAATCAAGCTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGCAGACTTCAAGGGCGTGAAGATGAAGTTCTGGCTAAACTTGAAAAATTTAAGAATTCTTTATCAGCAAAGGCGACACCCCCAACTGATGAATCTGAAGACGTTAGTAATGAGGAATTGTCAGACTGGAAAGGTGTTAGTTTAAAGTTTGCCCCACAGACTGGCAAGGACCGCATGTCTCGCAATGAAGACCCAAACGACTATGTTGTGCATGACCCTCTTCTGGAGAAGGGGAAAGAGAAGTTCAATAGGATGATAGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGTTCCCTTACTTGA 1482 0.444 MSSVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAARNFVQLCLENYYDNTIFHRIIKDFLVQSGDPTGTGTGGESIYGGVFADEFHSRLKFKHRGIVAMANAGTLNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGELETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKLQIEAKADTKNKESGKKGVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEDTLNNELSSSRRDMQLSVRDALNSKKDEPQKDSDAGSMACLNFSDDDEADFDARMRMQILKKRKELGDLPPKPKLRNAGRSSPENHDTSSAARSNAVSVDEDQPKVEKLSLKKKGVGSEARAERMSNADADLQLLNQAERGRQLQKQKKRRLQGREDEVLAKLEKFKNSLSAKATPPTDESEDVSNEELSDWKGVSLKFAPQTGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMIAKQKRREREWAGSSLT 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02089 493 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Gma17g02089 493 CDD cyclophilin_CeCYP16-like 8 179 - -
Gma17g02089 493 MobiDBLite consensus disorder prediction 260 275 - -
Gma17g02089 493 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Gma17g02089 493 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Gma17g02089 493 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Gma17g02089 493 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Gma17g02089 493 MobiDBLite consensus disorder prediction 342 368 - -
Gma17g02089 493 MobiDBLite consensus disorder prediction 324 339 - -
Gma17g02089 493 Coils Coil 206 233 - -
Gma17g02089 493 Coils Coil 377 397 - -
Gma17g02089 493 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Gma17g02089 493 MobiDBLite consensus disorder prediction 244 285 - -
Gma17g02089 493 SUPERFAMILY Cyclophilin-like 14 180 IPR029000 -
Gma17g02089 493 Gene3D - 2 182 IPR029000 -
Gma17g02089 493 MobiDBLite consensus disorder prediction 447 463 - -
Gma17g02089 493 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 202 - -
Gma17g02089 493 MobiDBLite consensus disorder prediction 392 406 - -
Gma17g02089 493 MobiDBLite consensus disorder prediction 304 463 - -
Gma17g02089 493 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 202 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02089 Gma-Chr17 38190822 38197392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02089 9 172 U-box Gene Family AT5G67530 46.341 3.19e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02089 K12737 - gmx:100793148 946.421