Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02078 ATGGCAAACTACCACCGCAACAACGTCGAAAACGTCGTCCTCGGCCGCCACCACCACCACAGCCACCGTTCCAAGTCCGCCTCCGTCGCCGGCCACACCTTCCGCCTATGGAATGCCGCCTCCTTCCGCCGCATCATCTTCGACGCCGTCAGCTGCGGCGCCAGCTCCCGCTACGCCGCGAGATCCAACATCTCCGACGAGAAACAACACCTCCAACAAAAACAACAACATCATAAGACGACGTCGATGAAGAACAATGCGAAGTCGGAGAAGCTCTCGGATCTGCTGAGCATTGCGGAAGCCGAAACCGACGTGGAAACGAAGAAGAAAGAAGAGAAGCTGGAAGACTTGAAGCGCCTCGTGAAGGAGCTTCAGCAGCACGAAGAAGATTCGACGAAGAATAAAAAAAGTGAAGCTGCGGCGAAAGTGAGGTTGCTGGCGAAGGAGGAGTTGGAAGTAAGAGGAACGCTCGCTATGTTAGGTGCCATTCCTCCTCTCGTCGCAATGCTCGATGAAACCGAACAAAACGACGTCAATTCGCTCGTCTCTTCGCTCTACGCGCTGCTCAACCTCGGCATTGGAAACGACGCGAACAAAGCAGCTATTGTGAAAGTTGGGTCTGTTGAGAAGATGCTCAAGTTGATTGAATCTCCAGATGGTCTAGATTCTTCGGTTTCTGAAGCAATTGTTGCAAATTTCCTTGGATTAAGTGCTTTGGATTCGAATAAGCCCATAATTGGGTCTTCGGCTTCAATTTATTTCTTAGTTAGAACCCTTCAGAGTTTAGATGATGAGAGTAGTCCCCAAGCCAAACAAGATGCTCTCCGAGCATTGTACAATCTTTCAATCTTCCCAGGGAATGTTGCATTCATTTTGGAGACTGATTTGGTAGTGTTTCTGGTGAACTCAATAGGGGACATGGAGGTAACTGAAAGAACCCTTGCAACTCTCAGCAATATAGTGTCGACCCGCGAGGGTAGAAAGGCGATCAGCGCTGTGCCGGATTCGATCCCAATCTTGGTGGATGTGTTGAATTGGACGGATTCTCCGGAATGCCAGGAGAAGGCGTCGTACATTTTGATGGTTATGGCACACAAGTCCTATGGTGACAAGCAGGCCATGATTGAGGCAGGGATTGCGTCATCACTGCTTGAGTTGTCCCTTTTGGGTTCCACATTGGCTCAGAAAAGGGCATCAAGGATATTGGAGATTCTGAGGGTGGACAAAGGGAAGCAGGTTTCTGGGAGCTATGGATTGGGTGCAGCTGTCTCTGCCCCTATTTGTGGCTCTTTGTCGGGGAAGCCGGACGGAGGAGGAGGAAGAGAGTGTTTTGAGGAGGACGAAGAGATGATGAGCGAGGAGAAGAAAGCAGTGAAGCAATTAGTCCAGCAGAGCTTGCAGAACAACATGAGGAAAATCGTAAAGAGGGCCAATTTGCCTCATGATATCGTGCCATCAGATCATTTTAAGTCACTCACTTTGAGTTCTACTTCAAAGAGCCTGCCATTTTGA 1512 0.4967 MANYHRNNVENVVLGRHHHHSHRSKSASVAGHTFRLWNAASFRRIIFDAVSCGASSRYAARSNISDEKQHLQQKQQHHKTTSMKNNAKSEKLSDLLSIAEAETDVETKKKEEKLEDLKRLVKELQQHEEDSTKNKKSEAAAKVRLLAKEELEVRGTLAMLGAIPPLVAMLDETEQNDVNSLVSSLYALLNLGIGNDANKAAIVKVGSVEKMLKLIESPDGLDSSVSEAIVANFLGLSALDSNKPIIGSSASIYFLVRTLQSLDDESSPQAKQDALRALYNLSIFPGNVAFILETDLVVFLVNSIGDMEVTERTLATLSNIVSTREGRKAISAVPDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGIASSLLELSLLGSTLAQKRASRILEILRVDKGKQVSGSYGLGAAVSAPICGSLSGKPDGGGGRECFEEDEEMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFKSLTLSSTSKSLPF 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02078 503 MobiDBLite consensus disorder prediction 76 92 - -
Gma17g02078 503 Gene3D - 84 419 IPR011989 -
Gma17g02078 503 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 503 - -
Gma17g02078 503 SUPERFAMILY ARM repeat 117 405 IPR016024 -
Gma17g02078 503 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 503 - -
Gma17g02078 503 SMART arm_5 150 193 IPR000225 GO:0005515
Gma17g02078 503 SMART arm_5 239 283 IPR000225 GO:0005515
Gma17g02078 503 SMART arm_5 284 322 IPR000225 GO:0005515
Gma17g02078 503 SMART arm_5 326 365 IPR000225 GO:0005515
Gma17g02078 503 SMART arm_5 195 238 IPR000225 GO:0005515
Gma17g02078 503 Coils Coil 107 134 - -
Gma17g02078 503 MobiDBLite consensus disorder prediction 64 93 - -
Gma17g02078 503 Coils Coil 444 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02078 Gma-Chr17 37941037 37944181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02078 6 420 U-box Gene Family AT2G23140 28.837 1.19e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02078 - - gmx:100788575 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02078 17 37941037 37944181 Gma14g01027 14 12624050 12626531 GST
Gma17g02078 17 37941037 37944181 Gma04g00574 04 5187440 5189080 PCT
Gma17g02078 17 37941037 37944181 Gma06g00559 06 5007238 5008942 PCT
Gma04g00574 04 5187440 5189080 Gma17g02078 17 37941037 37944181 PCT
Gma06g00559 06 5007238 5008942 Gma17g02078 17 37941037 37944181 PCT