Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02073 atggaggacattgttcaaggatacgaatggttgaagttgaattctttagcatctagtaacaagagcatgatatccattaaatatagcaatGTTAGCTCACTGAATAATATTGATAAGATATTAGATTGTGAGAAGCGTTCTGGGGTAGCTTGTGAAAGTGATGCAACAAAATTGGGGTCAAAGCAAAGCTTTGTCAAGCAATATCTCGTTAAGTGGAAGGGACTATCATATTTGCACTGCACATGGGTTCCAGAGGAAGAGTTTCTGAAAGCTTTCAAGAATCATCCAGGCCTAAAGACCAAAATAAACAACTTCCATCGTCATATAGCATCAGCCAATAATCCTAATGAAGATTTTGTTGCCATTCGACCTGAATGGACTATGGTTGATCGAATACTTGCTTGCAGGGGTCATGATGATAAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCATATGATGAATGCTATTGGGAGCTCAAGTCAGATATCTCTGCATTTCAAACAGAGATAGAAAGATTTAACACCTTTAAGTCTAGATCAAGGAAACTTTTGTCTAGTAAGAAAAAGCGTAGTGTTGAGGATGATGCTGAACTGAATAAGCAGCAGAAAGAATTTCTACAGTATGAACATAGTCTTCAATTTCTTTCAGGGGGTGCACTGCATTCATATCAACTTGAAGGATTGAACTTCTTGCGATTCTCATGGTACAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTCGGCAAAACCATACAGAGTATTGCTTTCCTAGCATCCCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTACGAAACTGGGAACGTGAATTTGCAACTTGGGCTCCTCAAATGAATGTTGTTATGTATTTTGGATCTGCCAAAGCTCGTGCTTTTATTAGAGAGTATGAATTTTACTTTCCAAAGAATCAAAAGAGGATCAAGAAAAAAAAATCTAGACAGATAGTTAACGAAAGCAAACAAGAAAGGATCAAGTTTGATGTCCTTTTGACATCATATGAGATTATAAATTCTGATACATCATCATTGAAACATATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCATCGTCTCAAAAACAAGGACTCTAAATTATTTTCTTCATTGAAGCAATATTCTAGCAAACATCGTGTGCTTTTAACAGGAACTCCACTTCAGAACAATCTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCGAGAGGAGCAGATTTTGAGACTACATAAAATGTTGGCGCCACATCTCTTGCGAAGACTGAAGAAAGATGTCATGAAGGAACTTCCTCCAAAAAAGGAACTTATTTTGCGTGTTGAGTTATGCAGCAAACAGAAAGAATACTACAAGGCAATTTTGACCCGTAATTATCAGATATTAACCCACCAAGGTGGTGCACACATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCCTATATGTTACAAGGAGTTCAACCAGACCTAAAGGATGAAAAAGAATCATACAAGCAATTTCTTGAATCGTCTGGGAAGTTGCAATTGTTGGATAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTTCTCATATATTCCCAATTTCAGCACATGCTGGATTTGCTTGAAGATTACTGTGTTTACAAGCATTGGCAGTATGAGAGGATAGATGGCAAGGTTGGAGGAGCTGAAAGACAAGTACGAATAGATCGGTTTAATGCTAAAAATTCTTCAAGATTTTGTTTCATTCTTTCTACTAGAGCTGGGGGATTGGGAATAAACCTAACAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGATGATTTATAGGCTTATAACGAGGGGAACAATTGAGGAAAGGATGATTCAGATTACAAAGAAGAAAATGGTGTTAGAACACCTAGTTGTAGGGAGTCTAAAGGCTCAAAACATTAACCAGGAAGAGTTAGATGATATCGTAAGGTATGGCTCAAAGGAGTTGTTTGCTGATGAGAATGATGAAGTTGGCAAATCTCGCCTAATTCATTATGATGATGAAGCAATAGACAGACTGCTGGATCGAGATCAACTTGGAGATGAAAAGGCTGCTGTAGATGGTGAAGATGAAGATGGATTTTTGAAGGCCTTTAAGGTGGCAAATTTTGAATATGTTGAGGAAGTTGAGCCATCAGAGGAGGTGACACAAAATAGAGCAAAGGAGAACCAATCCTCTGTGACTAGTTCAAAAAGAACAAATTACTGGGAAGAGTTGTTGAAAAATGCATATGAAGAGAATAAAGTTGAAGAGTTAAATGCCTTGGGCAAAGGCAAGCGAAACAGAAATAAATGGCTGGGGGGCGGTTTTAGTGGTTTGGAAGATGTAAGCTCTGATGATGAAGATGACAGTTACAAAGAGGATCTTACTGATGATGATTCAAATTCAACTGAAACTACTACTACTAGAAGGCCTCACAAAAAGAAAGCTCGTGATAGCATGGGGCCACTTCCTTTAATGGAAGGTGAAGGAAGATCTCTGAAAGTACTTGGTTTTACTCAAAATCAAAGGGCTGCATTTGTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAAGAATTTACTTCCCGCATGAAACAGAAGAGTTATGAAGAAATCATGGAgtatggaaaaCTTTTCTTGTCTCATATTGCAGAAGATATAACAGATTCCCCTACATTCACAGATGGTGTTCCAAAAGAAGGACTTCGAATAAAAGATATACTTGCAAGGATTGCAGTTCTGCTCTTGATAAGGGACAAA 2952 0.3682 MEDIVQGYEWLKLNSLASSNKSMISIKYSNVSSLNNIDKILDCEKRSGVACESDATKLGSKQSFVKQYLVKWKGLSYLHCTWVPEEEFLKAFKNHPGLKTKINNFHRHIASANNPNEDFVAIRPEWTMVDRILACRGHDDKKEYLVKWKELPYDECYWELKSDISAFQTEIERFNTFKSRSRKLLSSKKKRSVEDDAELNKQQKEFLQYEHSLQFLSGGALHSYQLEGLNFLRFSWYKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGSAKARAFIREYEFYFPKNQKRIKKKKSRQIVNESKQERIKFDVLLTSYEIINSDTSSLKHIKWECMIVDEGHRLKNKDSKLFSSLKQYSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRLKKDVMKELPPKKELILRVELCSKQKEYYKAILTRNYQILTHQGGAHISLINVVMELRKLCCHPYMLQGVQPDLKDEKESYKQFLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCVYKHWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFILSTRAGGLGINLTTADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEERMIQITKKKMVLEHLVVGSLKAQNINQEELDDIVRYGSKELFADENDEVGKSRLIHYDDEAIDRLLDRDQLGDEKAAVDGEDEDGFLKAFKVANFEYVEEVEPSEEVTQNRAKENQSSVTSSKRTNYWEELLKNAYEENKVEELNALGKGKRNRNKWLGGGFSGLEDVSSDDEDDSYKEDLTDDDSNSTETTTTRRPHKKKARDSMGPLPLMEGEGRSLKVLGFTQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKSYEEIMEYGKLFLSHIAEDITDSPTFTDGVPKEGLRIKDILARIAVLLLIRDK 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02073 984 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 547 708 IPR001650 -
Gma17g02073 984 Gene3D - 117 176 - -
Gma17g02073 984 MobiDBLite consensus disorder prediction 857 872 - -
Gma17g02073 984 Pfam Chromo (CHRromatin Organisation MOdifier) domain 128 175 IPR023780 -
Gma17g02073 984 Pfam Chromo (CHRromatin Organisation MOdifier) domain 39 94 IPR023780 -
Gma17g02073 984 CDD SF2_C_SNF 542 668 - -
Gma17g02073 984 Gene3D - 464 688 IPR027417 -
Gma17g02073 984 Pfam CHD subfamily II, DUF1087 780 830 IPR009463 -
Gma17g02073 984 SMART ultradead3 217 430 IPR014001 -
Gma17g02073 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 710 IPR027417 -
Gma17g02073 984 Pfam CHD subfamily II, SANT-like domain 867 984 IPR009462 GO:0003677|GO:0006338
Gma17g02073 984 SMART DUF1086_2 848 984 IPR009462 GO:0003677|GO:0006338
Gma17g02073 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 454 IPR027417 -
Gma17g02073 984 Pfam SNF2-related domain 242 521 IPR000330 GO:0005524|GO:0140658
Gma17g02073 984 SMART helicmild6 573 657 IPR001650 -
Gma17g02073 984 CDD CD1_tandem 33 107 - -
Gma17g02073 984 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 419 IPR014001 -
Gma17g02073 984 MobiDBLite consensus disorder prediction 837 886 - -
Gma17g02073 984 MobiDBLite consensus disorder prediction 778 798 - -
Gma17g02073 984 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 30 984 - -
Gma17g02073 984 Pfam Helicase conserved C-terminal domain 544 657 IPR001650 -
Gma17g02073 984 Gene3D - 32 110 - -
Gma17g02073 984 Gene3D - 214 463 IPR038718 -
Gma17g02073 984 Coils Coil 424 444 - -
Gma17g02073 984 ProSiteProfiles Chromo and chromo shadow domain profile. 127 189 IPR000953 -
Gma17g02073 984 MobiDBLite consensus disorder prediction 842 856 - -
Gma17g02073 984 CDD CD2_tandem 125 174 - -
Gma17g02073 984 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 30 984 - -
Gma17g02073 984 ProSiteProfiles Chromo and chromo shadow domain profile. 35 117 IPR000953 -
Gma17g02073 984 SMART DUF1087_2 777 846 IPR009463 -
Gma17g02073 984 SUPERFAMILY Chromo domain-like 35 112 IPR016197 -
Gma17g02073 984 SMART chromo_7 125 179 IPR000953 -
Gma17g02073 984 SMART chromo_7 33 110 IPR000953 -
Gma17g02073 984 SUPERFAMILY Chromo domain-like 114 177 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02073 Gma-Chr17 37801436 37825267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02073 243 718 RAD5 or RAD16-like Gene Family AT1G02670 24.910 9.52e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma17g02073 SNF2_N 4.7e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02073 K11643 - gmx:100779829 1604.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02073 17 37801436 37825267 Gma04g00579 04 5220989 5245476 PCT
Gma17g02073 17 37801436 37825267 Gma06g00564 06 5029359 5047013 PCT
Gma04g00579 04 5220989 5245476 Gma17g02073 17 37801436 37825267 PCT
Gma06g00564 06 5029359 5047013 Gma17g02073 17 37801436 37825267 PCT