Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02071 ATGACCGTGGTGGAGAATCATACAATGGATGATCTCAGAGACCAGTTTCCTATTGGAATGCGTGTTCTTGCTGTTGATGATGACTCAACATGTCTCATGGTTTTGGAGACTCTGCTTCGAAGGTGTCAATACCATGTAACCACTACTAAAAATGCAATAACGGCATTGAATTTGTTGAGAGAAAACAAAACCATGTTTGACCTGGTAATCAGTGATGTCCACATGCCAGACATGGATGGATTTAAGCTGCTGGAGCTTGTGGGGCTTGAGATGGACCTACCTGTCATAATGTTGTCTGTAAATGATGACCCTAAGATGGTGATGAAGGGAATTACACATGGAGCTTGTGATTATCTTCTGAAACCTGTTAGAATTGAGGAGCTACAGAACATTTGGCAGCATGTAATCAGGAGGAAAAAGATTGATTCAAAGGAGCAGAACAAAACCAGCGACTATGACAAAACTAATTCTGATAGTGGTAATGGAAGAGGGTCAGCAGCGACAGGAAATTCTGATCAAAATGGAAAGCCTTCAAAAAAGAGGAAGGATCAGGATGAAGATGATGATGAGGAGAATGATACTGACCATGACAATGAGGACCCATCAACTCAGAAGAAGCCTCGAGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTTCTGCTGTCAATCTATTAGGCATTGACAAGGCTGTACCTAAAAAGATTCTTGACTTGATGAATGATGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTCCAGAAATATAGACTTTATCTGAAAAGAATTAGCTGTGGGGCAAACCGACAGGCTAATATGGTGGCAGCCTTAGGTACTGCAGATTCATCTTATTTGAGAATGGGTTCTCTGAGTGGCGTTGGACATTTGCAGACATTGACTGGTCCACAACAGTTTCATAACAATGCTTTCAGACCCTTTCCACCTGGTGGAATGATTGGTAGATTGAACACTTCTGTTGGTCTGAATAATCATGGGTTGTCTTCTTCAGAAGCTCTTCAGTTGAGTCATGCACAAAATTTAAACAACTCCATAAATGATCCACTTAAGTTCCAATCATCCATAGCTTGTGGTAATCAAAATGCTATCCAGGGAATGCCAATGTCTATAGGCCTTGATCAATTGCAACATAATAAGGGTGTTAGTGTTAGTGTTGGTCCTATTCAAAACATGTCCCCTCTTATTGATGCCAGACCAACTTTTGCTGTGTCAAATAGACTCTCAGATCAAATACCAAAAGTAACAATGGGTTGCTCACCCTCTCCGGTCTTGGACGTCTCAAACAATGCCTTGGTATTGAAAGCAGATAGTGAAAACACACAAGGGAGAGGAGTATATGAGAATTTAACTTCAGTAGCATCTCAGCATTCACAATTTTCGCTTCCTTTGCTGGGTCATGGTAGGTGTAGTGATATTTGGTCAAGTCCTATGCGGTCATCTGGGACAAATTCTTACCCTCCAAGTGAAACTTTGCAAGGGGGGAATCTGAGTGGTGCTTCATCAATTACTTCACTGTCTAATCAATCCCATGATTCACAGACGGATATGCACTCTCAAGGACTCATTTTTACAAATAATTCAGGACAAATTAGCAATAATGTGCCATTTCTCGGGTGGGATGACCATAATCATGATAGTAGTTACCATTCAAATGTTATTGGTAACTCAATAGACTCTCTGATTGATCCAGAAGGTCATACTTCTATTAACTCAACCTACAACAGAAACTTGGACTTCAATTTCTGTGATCCCTTACAAATGAAGCATGATGGAATTATGGGATTGAGTGACGAAAACTCATTGAAACAACAACACAGGTACATCATGAACCAGCAGAAGTCTCAAAACAGTCGCGCCCCTAATAATATTGGTTCATTGGAAGACTTTGTCAGTTCGATGATGAAACAGAAACAAGACAAGGTGAAATTCTTGGACGGATCATATTTATGCAACAATAATTACCCTGACGGAACATCCATGTGA 2004 0.4087 MTVVENHTMDDLRDQFPIGMRVLAVDDDSTCLMVLETLLRRCQYHVTTTKNAITALNLLRENKTMFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNDDPKMVMKGITHGACDYLLKPVRIEELQNIWQHVIRRKKIDSKEQNKTSDYDKTNSDSGNGRGSAATGNSDQNGKPSKKRKDQDEDDDEENDTDHDNEDPSTQKKPRVVWSVELHRKFVSAVNLLGIDKAVPKKILDLMNDEKLTRENVASHLQKYRLYLKRISCGANRQANMVAALGTADSSYLRMGSLSGVGHLQTLTGPQQFHNNAFRPFPPGGMIGRLNTSVGLNNHGLSSSEALQLSHAQNLNNSINDPLKFQSSIACGNQNAIQGMPMSIGLDQLQHNKGVSVSVGPIQNMSPLIDARPTFAVSNRLSDQIPKVTMGCSPSPVLDVSNNALVLKADSENTQGRGVYENLTSVASQHSQFSLPLLGHGRCSDIWSSPMRSSGTNSYPPSETLQGGNLSGASSITSLSNQSHDSQTDMHSQGLIFTNNSGQISNNVPFLGWDDHNHDSSYHSNVIGNSIDSLIDPEGHTSINSTYNRNLDFNFCDPLQMKHDGIMGLSDENSLKQQHRYIMNQQKSQNSRAPNNIGSLEDFVSSMMKQKQDKVKFLDGSYLCNNNYPDGTSM 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02071 667 Gene3D - 20 184 - -
Gma17g02071 667 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Gma17g02071 667 MobiDBLite consensus disorder prediction 482 523 - -
Gma17g02071 667 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Gma17g02071 667 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Gma17g02071 667 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 650 IPR045279 GO:0009736
Gma17g02071 667 PIRSF RR_ARR_type-B 1 666 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gma17g02071 667 Gene3D - 202 265 - -
Gma17g02071 667 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Gma17g02071 667 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Gma17g02071 667 Pfam Response regulator receiver domain 22 130 IPR001789 GO:0000160
Gma17g02071 667 CDD REC_typeB_ARR-like 22 136 - -
Gma17g02071 667 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 650 - -
Gma17g02071 667 SUPERFAMILY CheY-like 19 144 IPR011006 -
Gma17g02071 667 MobiDBLite consensus disorder prediction 153 174 - -
Gma17g02071 667 MobiDBLite consensus disorder prediction 143 207 - -
Gma17g02071 667 SMART REC_2 20 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02071 Gma-Chr17 37755679 37761531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02071 1 647 Response Regulator Gene Family AT2G25180 42.365 6.58e-131 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma17g02071 Response_reg 5.8e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02071 - K14491 gmx:100777171 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02071 17 37755679 37761531 Gma14g01036 14 12912912 12918464 GST
Gma17g02071 17 37755679 37761531 Gma04g00580 04 5247822 5252465 PCT
Gma17g02071 17 37755679 37761531 Gma06g00565 06 5049396 5054378 PCT
Gma04g00580 04 5247822 5252465 Gma17g02071 17 37755679 37761531 PCT
Gma06g00565 06 5049396 5054378 Gma17g02071 17 37755679 37761531 PCT