LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma17g02063	ATGGCGAGGATTCCTAACAAGATTAGGTCTAGTGATGGATCAAAAGAAGCGCTTAAGCTTGCTGTTAGGATCACCGATCTTTGGTTCGTTGGGACTCCTGACAAGTCTGAGCAAGCGGAAATGGTTTTTGTTGATTCTGAGGGTGATCAAATTCATGCTATTTGTAAATCGGATCACCTCAAGTCTTGGAAAGCTGATTTGAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGTTGTTAAGAATGATGGTCAATTTAGAGTGTGCGAACATGAGTACAAGTTATTTTTTATTGGAGTGACGGTTGTTAGAGAAGCTGATTTGCATGAACTGCCTTTTAAGGAATTTAGATTTGTTGAATTTGCAAATGTTGTTGCTGGTAATTTTGTGTCTGGCCTGTTGGTTGATATTATTGGGGTCGTTGATCAGGTGGTCTTTCGGCATGTTTCATCGAAAAATACCAGGGTTGTTTTTAGAATGAAGGATTTGAGTGGTGAAATTTTGTCTTGCACACTTTGGGAGAATTACTGTGCTCAGTTCCTATCCTATTTGAATGAACGTGGGGATGATGGGCCGATGGTTATTATATTGACGCATGCCAGAATAAAAGATGCACAGGGTAATTATCCAGCTTCAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTGATTAATTATCCTATATTAGAAATTCAGGAATTTAAAGAGAGGCTTTTAGATTTAGGTGTTGAGGTGAGTCGAGTTTTGCTACCTGGCGATCAAGCAAGCTCACAAGTTTCAGGGGGAAGTCAGCTATCATCAAAGGATTCGTTTCTTTCAAAGGCTGAAGCCAAAACTATTTTAGAAATCAATGCCATTTCTGAGGACGCTGTTTGTGTTACGGTGGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTGTTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGATATCCCAATAGGACCATTCACATGTGGATGTGGCAAGGATAATGATCAGCCTGTTCTAAGGTATAGAGTTGAAGTCATGGTTACACAAAACAATAAGAGTGGCAAATTTTTGCTCTGGGACCGTGAATATGCTGAATTGATTGGCCAAACGGCTGATGATGTGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCCCCTCAAGCACTTGACAAATTGTTGGGTCATGTGCTTGCTTTTAAGGTCAGGATTCAATCAAGATTCAAAAATGCAGTTGTACTTAAATACTCAAAAGACCTGGATTTGATCAATGCTGTTCTGGAGATGCTGGCTGATAGTGAGCAATCTCTATCTGTCACAGCTAACCATGATCCGGTTGCAGGGTTGCCTTTAACACCCAAAAAGTGGATGTCATCTGATGAAGCCAATGATGGGTTAGGGAGCTCTCAAATTTCGTCAGCCCAACTATCGTCTAACAAATTAACAAGACATTCTCATAGGAGCTGA	1482	0.4001	MARIPNKIRSSDGSKEALKLAVRITDLWFVGTPDKSEQAEMVFVDSEGDQIHAICKSDHLKSWKADLKENCTYVMHNFKVVKNDGQFRVCEHEYKLFFIGVTVVREADLHELPFKEFRFVEFANVVAGNFVSGLLVDIIGVVDQVVFRHVSSKNTRVVFRMKDLSGEILSCTLWENYCAQFLSYLNERGDDGPMVIILTHARIKDAQGNYPASVSNSFKASKLLINYPILEIQEFKERLLDLGVEVSRVLLPGDQASSQVSGGSQLSSKDSFLSKAEAKTILEINAISEDAVCVTVGTISKIVMDNHSWCYPACAQCHRKTDIPIGPFTCGCGKDNDQPVLRYRVEVMVTQNNKSGKFLLWDREYAELIGQTADDVNRVKIEDGDLDLNASPQALDKLLGHVLAFKVRIQSRFKNAVVLKYSKDLDLINAVLEMLADSEQSLSVTANHDPVAGLPLTPKKWMSSDEANDGLGSSQISSAQLSSNKLTRHSHRS	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma17g02063	493	MobiDBLite	consensus disorder prediction	467	486	-	-
	Gma17g02063	493	CDD	RPA1_DBD_B_like	137	239	-	-
	Gma17g02063	493	PANTHER	RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED	12	385	-	-
	Gma17g02063	493	Gene3D	-	111	245	IPR012340	-
	Gma17g02063	493	SUPERFAMILY	Nucleic acid-binding proteins	20	106	IPR012340	-
	Gma17g02063	493	Gene3D	-	6	106	IPR012340	-
	Gma17g02063	493	CDD	RPA1_DBD_A_like	19	104	-	-
	Gma17g02063	493	CDD	RPA1_DBD_C	275	409	IPR013955	-
	Gma17g02063	493	MobiDBLite	consensus disorder prediction	457	493	-	-
	Gma17g02063	493	SUPERFAMILY	Nucleic acid-binding proteins	117	239	IPR012340	-
	Gma17g02063	493	Pfam	Domain of unknown function DUF223	40	127	IPR003871	-
	Gma17g02063	493	Pfam	Replication factor-A C terminal domain	297	410	IPR013955	-
	Gma17g02063	493	Gene3D	-	259	436	IPR012340	-
	Gma17g02063	493	PANTHER	REPLICATION FACTOR A 1, RFA1	12	385	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Gma17g02063	493	SUPERFAMILY	Nucleic acid-binding proteins	279	415	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma17g02063	Gma-Chr17	37626246	37628757	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma17g02063	20	387	Core DNA Replication Machinery Family	AT5G08020	24.282	3.26e-14	73.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma17g02063	-		-	gmx:102661204	764.992