Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02060 ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGAAGACTAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCTGCTAGGGCCTATGATGAAGCAGCTAGGCTAATGTGTGGTGCAAGGGCAAGAACAAACTTCCCTTTCAATCCAAATGTGTCACACTCATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTGACTGCAAAACTTCACAGGTGCTACATGGCTTCTTTGCAAGTGACAAGACAAGCTTTGGCATCTGAGTCTCAGAGAACACCACCCTCAGTGCAAAATGCAACAACCTCCACAACCACACCAATTAGCAACAACTTCAGTGTGAAGAGTGAGCAAACTCATGCAGTGTTGCCACATAAGAGACCAGAGGAGGAGCAAGAGTCAGAGGCAAATAGGGGTGTGAAAAGGGTTAAGGCTGTGGAAAATGTTCCTCTGCAATTCAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGATCTATTGAACTCTGCTCTGTCATTTCACCCCAGGCCCTCTAA 609 0.4663 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVSHSSSSSSKLLSATLTAKLHRCYMASLQVTRQALASESQRTPPSVQNATTSTTTPISNNFSVKSEQTHAVLPHKRPEEEQESEANRGVKRVKAVENVPLQFKPLEEDHIEQMIEELLDYGSIELCSVISPQAL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02060 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 196 - -
Gma17g02060 202 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Gma17g02060 202 MobiDBLite consensus disorder prediction 103 158 - -
Gma17g02060 202 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 196 - -
Gma17g02060 202 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Gma17g02060 202 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Gma17g02060 202 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Gma17g02060 202 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Gma17g02060 202 MobiDBLite consensus disorder prediction 137 158 - -
Gma17g02060 202 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Gma17g02060 202 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Gma17g02060 202 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Gma17g02060 202 MobiDBLite consensus disorder prediction 103 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02060 Gma-Chr17 37545146 37546190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02060 1 202 AP2-EREBP Transcription Factor Family AT5G25190 61.058 3.14e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma17g02060 AP2 6.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02060 - - gmx:100785918 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02060 17 37545146 37546190 Gma14g01049 14 13236951 13238004 GST
Gma17g02060 17 37545146 37546190 Gma04g00584 04 5309988 5311265 PCT
Gma17g02060 17 37545146 37546190 Gma06g00570 06 5109791 5111114 PCT
Gma04g00584 04 5309988 5311265 Gma17g02060 17 37545146 37546190 PCT
Gma06g00570 06 5109791 5111114 Gma17g02060 17 37545146 37546190 PCT