Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02053 ATGGCGTACCATAACCACCACAACCTTTCACAACAAGACCTTCCTCCACTCCACCATTTCCCGAACCAATCCATGTTACCAGACCAACAACTACTTCCGTCCTCACCCGAACCTAACTCCAAACCTCCCTCCGATCCACACCCTCTCCAAACCGCGCCGAATTGGCTCAACGACGCGCTCCTCCGCACTCACTACACCGACACCACTAACACCGCCACCGTCGCCACCAACAGCAACGTTAACGTTAAGGTTAACGGTTCTAATTTCCTGAAACTGAACCCCGGCGCCTCCGACGCGCAGTGGCTGGCGCGGCCGGCGCTCCACCGCCACCCCGGCGAGGTCATCGATGACGGCGCCGGGGAGTCCATGGTGGAGCACGCCGATTTGAAGGACGGCGGCGGAGACGCCGTGAGCTGGCAGATTGGGCGGTGTAAGACGGAGATTCTGCAGCACCCGCTGTACGAGCAGCTGCTGTCGGCGCACGTGGCGTGCCTCCGGATCGCCACGCCGGTGGACCAGCTGCCGAGGATCGACGCGCAGCTGGCGCAGTCGCAGAATGTGGTCGCGAAATACGCAGTGTTCGGACACAACAACATCGTCGCCGATGACAAAGAACTCGACCAGTTCATGTCGCACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAATTGCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGTTAGAGCAATCATTGCAGAGTCTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAGAATGACCAAGTAGATAGTGATGCCAATCTCTTCGATTGTAGTTTTGATGGGGCAGATAGCATGGGGTTTGGTCCTCTTGTTCCTACAGAGAGCGAGAGGTCCCTCATGGAGCGAGTAAGACAAGAATTAAAGCATGAACTGAAACAGGGTTATAAGGAGAAAATTGTTGACATAAGAGAGGAAATTTTGCGCAAGAGAAGAGCAGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCGAAGAGGATAAGGCAAGGTTGGTGCAAGAAACTGGGTTGCAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGAAGCAATGCAGGTGATAACTGA 1236 0.5243 MAYHNHHNLSQQDLPPLHHFPNQSMLPDQQLLPSSPEPNSKPPSDPHPLQTAPNWLNDALLRTHYTDTTNTATVATNSNVNVKVNGSNFLKLNPGASDAQWLARPALHRHPGEVIDDGAGESMVEHADLKDGGGDAVSWQIGRCKTEILQHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYAVFGHNNIVADDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDENDQVDSDANLFDCSFDGADSMGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTALKSKRKRSNAGDN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02053 411 MobiDBLite consensus disorder prediction 1 35 - -
Gma17g02053 411 Pfam Homeobox KN domain 348 387 IPR008422 GO:0003677|GO:0006355
Gma17g02053 411 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 407 - -
Gma17g02053 411 MobiDBLite consensus disorder prediction 385 411 - -
Gma17g02053 411 SMART KNOX1_2 142 186 IPR005540 GO:0003677|GO:0005634
Gma17g02053 411 Pfam KNOX1 domain 145 185 IPR005540 GO:0003677|GO:0005634
Gma17g02053 411 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 40 407 - -
Gma17g02053 411 Pfam KNOX2 domain 201 250 IPR005541 GO:0003677|GO:0005634
Gma17g02053 411 SMART HOX_1 330 395 IPR001356 GO:0003677
Gma17g02053 411 ProSiteProfiles ELK domain profile. 308 328 IPR005539 GO:0003677
Gma17g02053 411 CDD homeodomain 331 392 IPR001356 GO:0003677
Gma17g02053 411 Pfam ELK domain 308 329 IPR005539 GO:0003677
Gma17g02053 411 SMART ELK_2 308 329 IPR005539 GO:0003677
Gma17g02053 411 MobiDBLite consensus disorder prediction 1 53 - -
Gma17g02053 411 SMART KNOX2_2 196 251 IPR005541 GO:0003677|GO:0005634
Gma17g02053 411 ProSiteProfiles 'Homeobox' domain profile. 328 391 IPR001356 GO:0003677
Gma17g02053 411 Gene3D - 329 390 - -
Gma17g02053 411 MobiDBLite consensus disorder prediction 385 402 - -
Gma17g02053 411 SUPERFAMILY Homeodomain-like 330 394 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02053 Gma-Chr17 37389878 37395141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02053 53 405 Homeobox Transcription Factor Family AT5G25220 69.657 1.52e-179 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma17g02053 KNOX2 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02053 - - gmx:100784317 792.341