Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02048 ATGGAGAGCGCGTGGAAGAGGAAATGTGATTCGCCGTTTCAGCCGTCCACGTCCGCGGCGGTTCCGTCTGCACCGGTGCCGGAGCCGGAGCCGATAAACACAAGCCATTGTCTTTATCCACAATTTCCTCATGGCTTAAGATCAAAATTTGTTGGAGGGAAGCAATGCCCTGTTTACCAAAGCTTTCCCCACTCAATTACCCATGGATCAGGCCAAGCCGACACTGGAAGTTCATTTCTGTCTCTCCTTTATGCTCCTCCATCCTTGTTACAGCATGAGTCTTGGGATTTGTCTAATCGCAAGCTTTGCATCTCATCTTGTGATTGTACTGCTGCTATTGGGAATTCTGTTGTTGGTTCCATAGAAAGTGGAACCTTCCGAACATCTGGTGTGGGGTTGATGACAGAAAATTTAATAAACCGTAACCTGCAAAGTTGGGTGACTACTTTTCCTGAGATTTCTTCCAGGGCAATGGTTGGTCTGAAGAATAGTAGTAGTTTTGTCTTCCATGATATTCAGAGTAGCAATACTGCTACTCAGCCCACAATTCCTGGTGGTGAGAAAGCTAGGGAGTCTTTTTCTTCTTCAGGTCAGTGCCAAGGTACAAGCCCTGCATGTAGTCTAAATGTTTGCTGGTCAGATGTTCAAACTACACCAACTGTTGCTTTAGAACAAAGCTCATCTAAGTATGCAACACCTTTTATGAGTGGGTGCCCTCGTGTGTTCTGCATGGGAAAAAGTGGCCATCTTCTTCTTAGCAATACAGGGCTTCTTGGTATTGTTTGCTCATGCCATTGTTGCCACATGTCTGTTGCTAAGTTTTGCGAGCATTCAGGGTTATATGGTGTTGACCCAGGGGAAGCTGTTCGTATGGAAAGTGGGGAGACCATTTCTCAGTGGCAGAAGCAATACTTCTTGAAGTTTGGGATTAGGTCTCTGGGAAATGAGAATGAATGGGACTGGCCAGAAGTATTATCAACAACAGGAAGTCTGATGAGATCCAATGCATCTGCATTTGATATGTCCAAGACTAATTTGTCTCATATGTTGAGTTCATCTGCAGTCATGTCAAGGTCTGCAAAGTCTTCTGACTATGCCGTGTTTCCAAAAAATGCTCATGCAGACAACAATTTATTTATTGATGCATTGTCCGGTAAACAAGCGACAACAATCCAGGATGGTTGCAACATTCCACTCAAAGGTTTTACTGGTATTTCACAAAACAGCTTGTATGATCAGTTGAAAAACCAGCTAACGGTATCTAATCTGGCTATGTATACAACTGCACCAAACTTTGTTGGAACTCAATTGGATGATGGTTGTCAGCCAATACCTCCTTTCTTTGATTCTCAAAAAAGGAAAGGAAATTTGTCTAGTGCCCACTCTCCTTTGCAAATTCCAGCAAGCCTTTTGAAAGACCATGATTGCATCAAAAAGAAGAATGCTAATGATGGTCTTGTAGGCAAAGATGCAGCTTCTTCCAATATTGATCTTAGGCTTGGTCAACCACCTCAGACAGGAAATCTACTTCCATCATTTGCAGAACCACTTCTGTTTAATGCCCTTGCCAGTCCTCCAAAATCACAACCTCTGAAGCAGATGATTAATAATGCAGACCTCAGCAGGGAGGAGGAATTACAGAATAATTTTAGCTATGCTGCTGGTTCAATCAAAATGGTTCAAGAAATGCCTCAGCTTAAACTCAATAACTATATGTCTGCTGTGGGTAATGCTTCTGCTAGAGCTAGATCAGAAACTAAAAATGTGGCCGAGGGTTTATCATTTTCACCATTTCTGCAATTTGATAATCAATCTGGGGGAAAGACAAAAGCTAGTGAAAATTTGTGGAATGATGAAAGCTCTATCATGCCCAAGAAACTGTATTCTGATTACGGCCACACTGGAAGGCAATCAAACAATTCTGGCATAAGGACCAATAAAAGTTTGAACAATGATAAAGGGGTGAACTTTGCTAAAGACTCTGGTGTTAAAATAAATTCTGGTTTTGGTATTGGTCAGTTAATGGAATATCCAAGCTCCATCAAGAGAGCTGTTAGTGCTAGTGATATTTTGGTTGTTAACGGAAAGATACATGAATCAAGCTTACCATCAGATACATCTGTGTGTGCAGATATTTTGCATGGTTCAAACAATGTATCTTTTCTTGGGCAAGAAAATCATACTCCACAAAGATCCATTCCATTTAAAGGGATTTTGAAAGGCCTTCCCCATCATGTTTCAAGTTCTGTGTCAAATCAGACTCCTATTTTGCCACAGCAGCAGCAGGGCATTAATATGGATGCTTATTTGCTTGATGAAAACATGAGGTTGCTTGCATTGTCACAGATACTGGAGTTATCTAAGCAACAGCATGCATTGTATCTTAAATATATCAATCAGAAGCAAGGGAGATCCAGCTGTATTTCAAAAGTTCAGCATTATAGGTGTGAGGCTTCAACATCTGAACAGGGAACTTCTGGTGCAACGTTGAAATTGTCCCAAAATAGAGGAATTTGGGGGAATCACGAGAGTACTTATGCACATGTTATTGTGACTGTCCTTTCAGGTATGAATGGATATTGCCATTTGTCTGGCCTGCCACCAATACCTTTACATTCTAAAGAAAAGGAATCACGATGTAATGATTCTTATGACCTTCAAAATGAAGACACTTCTTTAAGCCTTGGTATAAACAAAGACAATACCAGGTCAGGTGCATGTGAAAAATGTTCTGAGCAACCATCAAATATATGTTTGGGAGGCAAGTACTCTTGCGCTGCTCAGACAAACTGTTGCAGAAGCAATTTTTTCTCAGGAATTGAACCCCTTTGTTACAACTTAAAGCAAAAACTTGGTAATGCCAGTGGTGAAACTTCTTTGAAGATGGCTTCAGATTTGAGTAGAGATGTGGATACATCAAAGGGAAAAAATATCCTCATTGAGCAGGGTGGGAAGTTAGATGGCCAAGACTCAATCAAAATTGGCTTTCATACACCTCAATGGAGAGATGTGCCAAGTAAGGTCAGGAAAGCAGTTTGTGATGCAACATCTTTAGATCAGACAGCTACTGGTTTGGATTGGGAAGGACAAGATGGTGTTCAACTTGGAAACATTTCTATGAAACGCTTCAAAAGAACTATTGACATGGGAGACATCTCAAAAGAGCAAAAAAGTTCTAATGTTTCTTCTGGATGCTCTGCTCCTGTGGTTACTCAGGCATCTGTGGAGGTCAACAAAATTGATTCCTGTACTGATGATGCTGTAGACACTGGCTTTGTCAACAACCTTGTAGTTGATGAAGGGTCAGGTATTGATCAAGGCTGGTCGTCAGATTTGGTTGAAAGAAGTGATGAGTTTCTAGGCTCGACCACTGGGAGTTGCTTGAAAAATGATTATCTGAGAGTCTTATATGATCAACCATGTTGCAATCTCCTTGATGACCTTAAACTGTTGGATTCCTTGATATGGAAGAAAGGACGGAATCAAAATCATTTTGTGCTTTCTTCTAATTGTAAAACCAATCAATCTCAAAAAGTCAAGAAAGTCCTTAAAGGAAAAAAGCGAAAGAGAAATGTGGTGAGGATTGTAGATGCTTCATCTTCCTTATTGCATAAAAAGAATGAAGAAGGTGCTGGGATTTGTAATTCCTCTTCTAGTTTGTCAAGAGAAATGCAAATGCACTCTTTGTCTAGCCTGAAAAAATCATCTAACAAGTCTTCCTTCGTTCAACCTAGTAACAAACAAAAACATACTGCATATTCATCCAAATTTCTTTCTTGTAAGAATCGTCTGAACAAGCATCAAAGTTTCAAAGTTGGCTATGAGTCAGAATCAAGCTCTGATGCTGAGTTTCACACATTGCCTGGAGTTTCAGGAACAAAGAAATTGGAAAAGGATCTCAGTTCTGATTGTTTTGAACAGTTTCAAATGCAAGAACTAGCCTATGAGGAACCTGAAAATGATAAACTGAGGCCATTCTCTTGCAGGAAGGAAAATGCTCATAGAATCACAAGGCCAGTAGTAGTATGTGGAAAATATGGTGAAATATCTAATGGGCATTTGGCTAGAGAGGTGCAAAAACCAGCAAAAATTGTCTCTCTCAGCAAGGTTCTTAAATCTTCCAAAAGATGTATGGGCCATACAAATGGAAAACCCAGACTAACTTCAAAAAAGAAATGGAAGAGATTGAGCATTGAAACAAGTAGTGGGCACTGCTGTAGGAACCCTGGTTTGAAAATTAAGGAACACAATGAAACCGAAAATACAATATTTTTAAATGAAACAAATGTTGATGTGTCTATGGAAGATTTGGAGAGAGGTGGCAAGCCACCTGCTGTATATAAAGGGAAGAGAGATGCCAAAGCTAAGCAGGGTGATAGTGTTGGAAATAGAGCTAATATTTCATTGAAGGTGAAGAACAAGGAAATTCGGAAACAGCGTAGTATTAATGAACTCACTGCTAAAGAAACCAAAGTGATGGATATGACGAAATGTGCTCAAGATCAGGAGCCTGGTTTGTGTGGCACAAAAAGTAGAAACTCTATTCAAGGTCACACGAGCATATCCACCATAAATTCAGATGCTTTCTGCTGTGTGTGTCGACGCTCAACCAATGATAAAATCAACTGTTTGTTGGAGTGTAGTCGATGTCTGATTAGAGTACATCAAGCTTGCTATGGTGTTTCCACATTACCCAAAAAAAGTAGTTGGTGTTGCAGGCCATGCCGAACAAACTCAAAAAATATTGCTTGTGTCCTTTGTGGTTATGGAGGTGGAGCCATGACTCGAGCAATAATGAGTCACACGATTGTCAAGAGCCTCCTCAAAGTGTGGAATTGTGAGAAAGATGGCATGCCTAGGGATACAACTTCATGTGAAGTTCTTGAAAAGGAAATAGATGCATTTCCATCCTCAAAAGATGGACTAGAAGTTGATCAAGAAAGTGTTTTGAAGCCGAAAATCGTTGATACATCAACAGATCTGATGAATCAAATATCTACAAATCACATACCACACACCCCAACCTCTTTTTCAAATTTCAAGGTACATAACAGCATTACAGAAGGGGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTAGAACAAGATGCCCTAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTTCACGTCCAAGAGCAGATGTGGTTTGTTCCATTTGCAATCGATGGGGTGGTTCTTGTATAGAGTGCAGGATTGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTCTTGCAAAGTGAGACTGAAGGTATTAATGATGAGAAGATTGGATTTTATGGAAGATGCATGCTTCATACTATTGAACCTAGATGTCTGTTCATATATGATCCTCTTGATGAAATTGGCAGTCAAGAACAAAAGGAATTCACCTGTGCAAGGGTAGAGGGTTACAAGGGCCGTAGGTGGGATGGTTTTCAGAATAATCAGTGCCAAGGTGGATGCCTTGTTCCTGAGGAGCAGCTAAATGCTTGGATACACATTAATGGGCAGAAATTATGTTCGCAGGGACTTCCAAAATTCCCAGATTTAGATATTGAGCATGATTGTCGAAAGGAATATGCTCGGTACAAACAAGCAAAGGGATGGAAACACCTTGTTGTATACAAGTCCCGAATACATGCCCTTGGTCTTTACACTTCTCGATTTATTTCCCGGGGTGAAATGGTACGATACTGGCCTACAAGTTTTTATATGACTCTCCACTATGATTGCAAATACGATGTATTTCCTTTACTTCTACAGGTTGTTGAGTATATTGGTGAAATTGTGGGGCTGCGTGTGGCTGATAAAAGAGAAAAGGAATATCAATCTGGAAGGAAACTTCAGTACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAACATATTATTGACGCCACAAGGAAAGGGGGGATTGCTCGATTTGTTAACCACTCATGCCTGCCAAATTGCGTGGCAAAAGTGATCACCGTAAGGCATGAAAAGAAGGTCGTCTTCTTGGCAGAGAGGGACATATTTCCTGGTGAAGAGATTACGTATGATTATCACTTTAACCACGAAGACGAAGGAAAGATTCCATGTTACTGCTATTCAAAAAATTGCAGGCGCTATATGAACTGA 6174 0.4048 MESAWKRKCDSPFQPSTSAAVPSAPVPEPEPINTSHCLYPQFPHGLRSKFVGGKQCPVYQSFPHSITHGSGQADTGSSFLSLLYAPPSLLQHESWDLSNRKLCISSCDCTAAIGNSVVGSIESGTFRTSGVGLMTENLINRNLQSWVTTFPEISSRAMVGLKNSSSFVFHDIQSSNTATQPTIPGGEKARESFSSSGQCQGTSPACSLNVCWSDVQTTPTVALEQSSSKYATPFMSGCPRVFCMGKSGHLLLSNTGLLGIVCSCHCCHMSVAKFCEHSGLYGVDPGEAVRMESGETISQWQKQYFLKFGIRSLGNENEWDWPEVLSTTGSLMRSNASAFDMSKTNLSHMLSSSAVMSRSAKSSDYAVFPKNAHADNNLFIDALSGKQATTIQDGCNIPLKGFTGISQNSLYDQLKNQLTVSNLAMYTTAPNFVGTQLDDGCQPIPPFFDSQKRKGNLSSAHSPLQIPASLLKDHDCIKKKNANDGLVGKDAASSNIDLRLGQPPQTGNLLPSFAEPLLFNALASPPKSQPLKQMINNADLSREEELQNNFSYAAGSIKMVQEMPQLKLNNYMSAVGNASARARSETKNVAEGLSFSPFLQFDNQSGGKTKASENLWNDESSIMPKKLYSDYGHTGRQSNNSGIRTNKSLNNDKGVNFAKDSGVKINSGFGIGQLMEYPSSIKRAVSASDILVVNGKIHESSLPSDTSVCADILHGSNNVSFLGQENHTPQRSIPFKGILKGLPHHVSSSVSNQTPILPQQQQGINMDAYLLDENMRLLALSQILELSKQQHALYLKYINQKQGRSSCISKVQHYRCEASTSEQGTSGATLKLSQNRGIWGNHESTYAHVIVTVLSGMNGYCHLSGLPPIPLHSKEKESRCNDSYDLQNEDTSLSLGINKDNTRSGACEKCSEQPSNICLGGKYSCAAQTNCCRSNFFSGIEPLCYNLKQKLGNASGETSLKMASDLSRDVDTSKGKNILIEQGGKLDGQDSIKIGFHTPQWRDVPSKVRKAVCDATSLDQTATGLDWEGQDGVQLGNISMKRFKRTIDMGDISKEQKSSNVSSGCSAPVVTQASVEVNKIDSCTDDAVDTGFVNNLVVDEGSGIDQGWSSDLVERSDEFLGSTTGSCLKNDYLRVLYDQPCCNLLDDLKLLDSLIWKKGRNQNHFVLSSNCKTNQSQKVKKVLKGKKRKRNVVRIVDASSSLLHKKNEEGAGICNSSSSLSREMQMHSLSSLKKSSNKSSFVQPSNKQKHTAYSSKFLSCKNRLNKHQSFKVGYESESSSDAEFHTLPGVSGTKKLEKDLSSDCFEQFQMQELAYEEPENDKLRPFSCRKENAHRITRPVVVCGKYGEISNGHLAREVQKPAKIVSLSKVLKSSKRCMGHTNGKPRLTSKKKWKRLSIETSSGHCCRNPGLKIKEHNETENTIFLNETNVDVSMEDLERGGKPPAVYKGKRDAKAKQGDSVGNRANISLKVKNKEIRKQRSINELTAKETKVMDMTKCAQDQEPGLCGTKSRNSIQGHTSISTINSDAFCCVCRRSTNDKINCLLECSRCLIRVHQACYGVSTLPKKSSWCCRPCRTNSKNIACVLCGYGGGAMTRAIMSHTIVKSLLKVWNCEKDGMPRDTTSCEVLEKEIDAFPSSKDGLEVDQESVLKPKIVDTSTDLMNQISTNHIPHTPTSFSNFKVHNSITEGVLDPTVKQWIHMVCGLWTPRTRCPNVDTMSAFDVSGVSRPRADVVCSICNRWGGSCIECRIADCSVKFHPWCAHQKNLLQSETEGINDEKIGFYGRCMLHTIEPRCLFIYDPLDEIGSQEQKEFTCARVEGYKGRRWDGFQNNQCQGGCLVPEEQLNAWIHINGQKLCSQGLPKFPDLDIEHDCRKEYARYKQAKGWKHLVVYKSRIHALGLYTSRFISRGEMVRYWPTSFYMTLHYDCKYDVFPLLLQVVEYIGEIVGLRVADKREKEYQSGRKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFLAERDIFPGEEITYDYHFNHEDEGKIPCYCYSKNCRRYMN 2057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02048 2057 ProSiteProfiles Extended PHD (ePHD) domain profile. 1676 1790 IPR034732 -
Gma17g02048 2057 Pfam PHD-finger 1542 1576 - -
Gma17g02048 2057 CDD ePHD 1697 1780 - -
Gma17g02048 2057 CDD SET_SETD1-like 1889 2053 - -
Gma17g02048 2057 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 31 2057 - -
Gma17g02048 2057 Pfam PHD-zinc-finger like domain 1694 1770 - -
Gma17g02048 2057 MobiDBLite consensus disorder prediction 1225 1248 - -
Gma17g02048 2057 Pfam SET domain 1900 2033 IPR001214 GO:0005515
Gma17g02048 2057 SMART PHD_3 1529 1576 IPR001965 -
Gma17g02048 2057 SMART PHD_3 1734 1790 IPR001965 -
Gma17g02048 2057 SMART set_7 1887 2040 IPR001214 GO:0005515
Gma17g02048 2057 SUPERFAMILY SET domain 1851 2053 IPR046341 -
Gma17g02048 2057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1677 1790 IPR013083 -
Gma17g02048 2057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1515 1583 IPR013083 -
Gma17g02048 2057 Gene3D SET domain 1803 2057 IPR046341 -
Gma17g02048 2057 ProSiteProfiles Zinc finger PHD-type profile. 1527 1578 IPR019787 -
Gma17g02048 2057 SUPERFAMILY FYVE/PHD zinc finger 1524 1581 IPR011011 -
Gma17g02048 2057 MobiDBLite consensus disorder prediction 1 27 - -
Gma17g02048 2057 ProSiteProfiles SET domain profile. 1887 2034 IPR001214 GO:0005515
Gma17g02048 2057 ProSiteProfiles Post-SET domain profile. 2041 2057 IPR003616 -
Gma17g02048 2057 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 31 2057 - -
Gma17g02048 2057 Pfam Tify domain binding domain 257 304 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02048 Gma-Chr17 37302300 37318528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02048 1939 2053 C2H2 Transcription Factor Family AT2G23740 35.556 5.42e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma17g02048 SET 4.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02048 - - gmx:100816713 4042.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02048 17 37302300 37318528 Gma14g01059 14 13697026 13717454 GST