Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02040 ATGGGGAAGTCGACAAGGAAAAAGAAATGTCCTTCGACTCCTCCGAAGGCCAACGACCACCACCACCACCACCGCCCGTCAAAATCATGGGAGGACAACAACAACAACAAACGCGTGGCGGTGGTGGCGGTGTCGTCCTCGGCGCTGGACGACGACACGGCGATGTTCATAAACATGTCGCAGGAGCTTCGTGAGGAAGGGAACAGGCTCTTCCAGAAGAAGGACCACGAAGGCGCCATGTTAAAGTACGAAAAAGCCCTCAAGCTCTTACCGAAGAGCCACATCGACGTGGCGCATCTTCACACCAGCATGGCCGTGCGTTACATGCAGCTGGGGGTCGGCGAGTACCCACGCGCCATCAGCGAGTGCAACATGGCGCTGCAGGTCTCGCCGAGGTACACCAAAGCGCTTTTAAAGCGCGTGAAATGCTACGAGGCGCTGAACCGCGTGGATTTGGCGATGCGGGACGTGCGCGTGGTTTTGAACTTGGAGCCGAACAATTCGATGGCGTTGGAGGTTTTGGATAGCTTGAGGATGACGATGGAGGAGAAGGGGATTGTCGTCGATGAGACAGAGATCGCCCTCGCCGCCCTGAAGATTGTGAGGGAGAAGATTAAGAATAAGAAGGAACACACGGGAGGAGAGGATGAAGGGAAAGCAAAAAAGGTTATAATTGAGGAGAAGGTTAAGGTTGAGAATGTTGAAAAGAAGGATAATTATAAGGataaggatcataagtttcataaggatcataaggatAAGGAGAAGAAGGTGGTGAAGAAAGTGAAAGAGAACGAGAAATTGGGGGAGAAAGACAAGGAAAAAGGGGTTGTTACTAGGACTGTGAAGTTGATACATGGAGAGGATATTAGATGGGCGCAATTGCCGGTGAATTGTGGGATGAGGCTGGTGAGGGATGTGATAAGAGATAGGTTTCCCGGGTTGAAGGGTGTTCTTGTGAAGTATAGGGATAGGGAGGGTGATTTGGTTACTATCACTAATATTGCTGAGTTGAGGTTGGCGGAGACTTGTCATGGTGTGGGGAAAGGGTTGAGTACTATGGAGGATTGGCTTGTGCAGTTTGCGAGGCTGTTTAAGAATCATGTTGGGTTTGATTCGGATGCGTATTTAGATATTCATGGGATTGGGATGAAGTTGTATTCAGAGGCAATGGAGGATGCGGTGACGAGTGAGAATGCCCAGGAGCTGTTTGACATTGCGGCGGATAGGTTTCAGGAGATGGCCGCTTTGGCGTTGTTTAATTGGGGGAGTGTGCATATGTCAAGGGCGAGGAAGATGGTGAGTATTCCAGACGATGGATCGAGGGAGTCATCGTTTGAGTTTGTTAAGGTGGGGTATGAGTGGGCTCTGAAGGAGTACATGAATGCAGAGAAGAGGTTTGAAGAGGCTGTGAAGATTAAATCGGATTTTTATGAAGGGCTGCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTCTGCTGGTCTTATTTGATTGCAAAAAATAAGGGTTTGGAAACTAGCTCTTCCGATGAGGTTCTGCAGTTCTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATGCTGATGTGGGAGGAGATTGAGGAGCGGCGTTTGAATGAACTTTCCAAATCGGATAAGTATAAAGAGCAGTTAGAAAAAATGGAGTATAAGCTAGGCCTGCCAACATGGGAGGAATGTTTAGAGGTTGCTGTTGAAAAATTTGAACTGGCTGGAGCTTCTACAACTGACATTGGGGTCATGATAAAGAACCACTGTTCTAACGAAACAACAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCGTCGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCATCAATTCGACTTGAACCATTGTTCCGTCGGCGTGTTCCTACACTCCATTACATCCTGGAGCAATTTTGA 1941 0.4755 MGKSTRKKKCPSTPPKANDHHHHHRPSKSWEDNNNNKRVAVVAVSSSALDDDTAMFINMSQELREEGNRLFQKKDHEGAMLKYEKALKLLPKSHIDVAHLHTSMAVRYMQLGVGEYPRAISECNMALQVSPRYTKALLKRVKCYEALNRVDLAMRDVRVVLNLEPNNSMALEVLDSLRMTMEEKGIVVDETEIALAALKIVREKIKNKKEHTGGEDEGKAKKVIIEEKVKVENVEKKDNYKDKDHKFHKDHKDKEKKVVKKVKENEKLGEKDKEKGVVTRTVKLIHGEDIRWAQLPVNCGMRLVRDVIRDRFPGLKGVLVKYRDREGDLVTITNIAELRLAETCHGVGKGLSTMEDWLVQFARLFKNHVGFDSDAYLDIHGIGMKLYSEAMEDAVTSENAQELFDIAADRFQEMAALALFNWGSVHMSRARKMVSIPDDGSRESSFEFVKVGYEWALKEYMNAEKRFEEAVKIKSDFYEGLLALGHQQFEQARLCWSYLIAKNKGLETSSSDEVLQFYNKAEDSMEKGMLMWEEIEERRLNELSKSDKYKEQLEKMEYKLGLPTWEECLEVAVEKFELAGASTTDIGVMIKNHCSNETTMEGFKIDEIVQASNEMYDGWQFDVPSIRLEPLFRRRVPTLHYILEQF 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02040 646 PANTHER PROTEIN PHOX4 556 645 - -
Gma17g02040 646 PANTHER PROTEIN PHOX4 1 346 - -
Gma17g02040 646 SUPERFAMILY CAD & PB1 domains 279 346 - -
Gma17g02040 646 PANTHER PROTEIN CLMP1 556 645 IPR044517 -
Gma17g02040 646 PANTHER PROTEIN CLMP1 349 557 IPR044517 -
Gma17g02040 646 PANTHER PROTEIN CLMP1 1 346 IPR044517 -
Gma17g02040 646 Gene3D Tetratricopeptide repeat domain 57 185 IPR011990 GO:0005515
Gma17g02040 646 SUPERFAMILY TPR-like 57 179 IPR011990 GO:0005515
Gma17g02040 646 SMART PB1_new 279 361 IPR000270 GO:0005515
Gma17g02040 646 MobiDBLite consensus disorder prediction 1 36 - -
Gma17g02040 646 Pfam PB1 domain 279 345 IPR000270 GO:0005515
Gma17g02040 646 Coils Coil 188 208 - -
Gma17g02040 646 PANTHER PROTEIN PHOX4 349 557 - -
Gma17g02040 646 CDD PB1 281 341 - -
Gma17g02040 646 ProSiteProfiles TPR repeat profile. 60 93 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02040 Gma-Chr17 36993421 36995774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02040 26 167 Calmodulin-binding Proteins AT3G25230 24.699 2.73e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02040 - - vra:106765155 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02040 17 36993421 36995774 Gma14g01065 14 13912964 13917151 GST
Gma17g02040 17 36993421 36995774 Gma04g00600 04 5470534 5474752 PCT
Gma17g02040 17 36993421 36995774 Gma06g00584 06 5283447 5283758 PCT
Gma04g00600 04 5470534 5474752 Gma17g02040 17 36993421 36995774 PCT
Gma06g00584 06 5283447 5283758 Gma17g02040 17 36993421 36995774 PCT