Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02029 ATGAATAGTTCAGCAGGGTTGGCCTTTTCACCTCATGTTATCACTATTGGAGTTGGGGAGGACATTGTGGCAAAATTATTGTCATTATCACAACAAAGACCAAGGGCTCTGTGCACCATGTCGGGCACTGGGACAGTATCTTTAGTCACTCTGCGACAGCCTACTTCTACCAATGCCAGTGTAACTTTCAAGGGACAATTCCAAATACTATGCTTGTCTGCTTCTTACTTGGTTGCCGAAGATGGTGGACCCTTGAATAGAACTGGTGGCATTAGTGTTTTACTCTCTAGCCCTGATGGTCATGTTATTGGTGGTGGTGTTGTTGTGCTTATTGCTGGAAGCCCAGTGCAAATTGTAATGTCATTCATACCGGATCTCCATAACATGGCATGGGTTTCAGTTGTTGCGGTACTTATGTCCTTTACATACTCATTTATTGGACTAGGACTAGGCATAGCAACAGTCATAATCTTCCAAGCACTTGGTGACATTGCCTTTGCCTATCCGTACTCCATTCTCCTTCTTGAGATCCAGGACACTTTACAGTCTCCTCCACCAGAAAATCAAACCATGCAATCTTCTACCTGTGCTGGTTTGGCTTTTTTGAGCCTTTCTGGTACTACTAATGATACACCATGCTGTGGATGCTTGCATCATTCTTCACTTGGTGGGAGGATATCAG 682 0.4413 MNSSAGLAFSPHVITIGVGEDIVAKLLSLSQQRPRALCTMSGTGTVSLVTLRQPTSTNASVTFKGQFQILCLSASYLVAEDGGPLNRTGGISVLLSSPDGHVIGGGVVVLIAGSPVQIVMSFIPDLHNMAWVSVVAVLMSFTYSFIGLGLGIATVIIFQALGDIAFAYPYSILLLEIQDTLQSPPPENQTMQSSTCAGLAFLSLSGTTNDTPCCGCLHHSSLGGRIS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02029 227 ProSiteProfiles PPC domain profile profile. 3 144 IPR005175 -
Gma17g02029 227 Pfam Plants and Prokaryotes Conserved (PCC) domain 11 121 IPR005175 -
Gma17g02029 227 CDD DUF296 11 99 IPR005175 -
Gma17g02029 227 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 122 - -
Gma17g02029 227 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 122 IPR039605 GO:0003680
Gma17g02029 227 Gene3D - 11 131 - -
Gma17g02029 227 SUPERFAMILY AF0104/ALDC/Ptd012-like 8 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02029 Gma-Chr17 36432937 36436409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02029 1 123 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 67.742 1.71e-50 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02029 - - gmx:100798706 199.519