Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02005 ATGGTACAAGCAAAGAAGTTCAGGGGAGTAAGACAGCGCCAATGGGGCTCATGGGTCTCAGAAATTCGTCACCCCTTGCTGAAGAGAAGGGTGTGGCTAGGTACATTTGAGACAGCAGAGGCTGCAGCAAGGGCATATGACCAAGCAGCAATTTTGATGAGTGGTCAAAATGCCAAGACCAATTTCCCTACACAAATGAATCAGCCTCAAGGTGCTACTACTACTACTCCGTGTGTAGACCCTTTCTCATCTCCAAATGTTCTTTCTGAGCATCTGAGTAGGAAGCTCAAGAGATGCTGCAAAGACCCTTCTCCATCCCTCACATGTCTAAGGCTAGATGCTGACAATTCCCACATTGGAGTGTGGCAAAAGGGTGCAGGACCACATTCAGACTCTAACTGGATTGTAAGGGTTGAGATTGGAAAGAAATTACATGCAGAGGGTGAGTCATCAAGTGTATCATCATCAGCAGCAGGAGGGTCACCACCAAAACCTAGTGTTGGTCATGGTGATGGTTATGGTGACGAAGAGGATAGAATTGCCATGCAGATGATTGATGAGCTTCTTAATTGGAATCATCCCTGTGGTTCGAGTAATTAA 600 0.4617 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMSGQNAKTNFPTQMNQPQGATTTTPCVDPFSSPNVLSEHLSRKLKRCCKDPSPSLTCLRLDADNSHIGVWQKGAGPHSDSNWIVRVEIGKKLHAEGESSSVSSSAAGGSPPKPSVGHGDGYGDEEDRIAMQMIDELLNWNHPCGSSN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02005 199 MobiDBLite consensus disorder prediction 146 179 - -
Gma17g02005 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 198 - -
Gma17g02005 199 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700|GO:0006355
Gma17g02005 199 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 198 - -
Gma17g02005 199 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Gma17g02005 199 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Gma17g02005 199 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Gma17g02005 199 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Gma17g02005 199 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Gma17g02005 199 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Gma17g02005 199 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02005 Gma-Chr17 35934514 35935730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02005 1 194 AP2-EREBP Transcription Factor Family AT5G25390 55.670 1.67e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma17g02005 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02005 - - gmx:100784305 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02005 17 35934514 35935730 Gma17g02005 17 35934514 35935730 ECH
Gma17g01076 17 9245148 9246073 Gma17g02005 17 35934514 35935730 ECH
Gma13g01473 13 29454981 29455962 Gma17g02005 17 35934514 35935730 ECH