Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01980 ATGGATTCTCCAGAACCTTCCAAGAACAACAATGGCAGTTCTTCTTCTGCCTCCACTCTCAACAACAACAACAACAACGATGATGCTCCTTCATCGGAATCCCCTCAAGTTCAAGAATCCCCCTTTCTTAGATTTGTGAAGACTTTATCTCCAATTCCCACCAAGGCTTCTCATATGACACAAGGTTGTGTAGGGCTCAGTTCTCCACCCCTTGTGTTCAAGTCTCCACGTATTAGTCACCGTGAAACACAGCTCACGAAAAGGCCCCAAGGCACTCAGTCATTCGGTGGAGTAATACCTCAAAGTGTAAATGAAGGCAACAGGCTTGGTGAAGCTCCTGGAGATTCCAGGACATCAAATTCTCATCAGTCACTGCCAGAGAGGTTTATAAATGACACTCAGCAGGTTTTTGACTTCAAGAATGATGAAAATACTCAATACTACAGCTCTCCATCATGCATTGATAAATATTTGGTGGATCCTGGGGATATTGATCAAATGTATTCAGCTGACCAGGATGTGCAACAACAATCTACAGATGCAGCTGAAACATCACTAAGTGACCAAACTCATTCAAAGAATAATATATTAAATTTTGACAGGAAAGATGGTCCTGGTGATAAAGTGGAAGAATCTTTGCCTTTGTCTGAAGATTTTAACAAGGTTCATCTAGAAAAGGCAGCATATGGTGAAGAACCTGAAAAGATGGAAGGGGAGAAAAATGATGTTGAATGGTCTTCTCAAGAGCCTGCAAAGTTAGAGTCCATTTTAGCTGCAGATGGTTTTGATAAACGATATAGTCATGGTCCACTTCCTCAGTGGATGCCTAATCCCCTGCAGGATGTTAAAGGATGTGAAGATTACAATGAGATGGTGCCAACCTCACATGTAACTGCAGAGAATATCTTGCAAGATGGTTCCGAGGCTACTCTAAAGCACCATGGCATTCGTAGACGCTGTCTACAATTTGGTGAAGCTGCCTCAAATGCTCTTGGAAGAAATGTGAAACTGAATGCAGCTTCAAACACAATGATAACAGTCAAGCCGTCTGAACTTGTCACTTCCTTGTGTCCTCGGCGAGGTAGTGGAAACTTCCCTTCAACAAGTCCCAAGCCATCAGGTATCGGGTTGCATTTAAATAGCATCATAAATGCTATTCCAATTGATCAGGCTGCTACTACTGGTGTGAGATTATCAGATAGTTCACAGGGGATGAAATCCACATCTTCAATAAGGTTACAAAGAATGGAGAATGTGAAGAGATCCATACTTTCATCTAATGTCGATGGGCGATCATTAGTTGATACAAGAACTGAGAGCCATGAAATTGATGATACAGTGGCTACAGATACTGGAAATTCTGAGGACCTCAACCAACCTCCTAGCCCCTGCAAGAAAAAGAAGAAAACATCAGTCACTGCTGATGACAATGGCTGTAAACGGTGCAACTGTAAGAAGAGTAAATGTTTAAAACTTTACTGTGATTGTTTTGCTGCTGGAACGTACTGTACCGACCCTTGTGCTTGCCAAGGCTGCTTAAACAGACCAGAATATGTAGAGACAGTTGTCGAGACTAAACAACAAATTGAATCCCGTAATCCAATTGCATTTGCTCCCAAGATTGTTCAGCCTACCACTGATATTTCTTCACATATGGATGATGAAAATCTGACAACACCGTCATCGGCAAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGGCTAATGTTGGATGCTCTAGTGGATGCCGATGTGAGGGATGTAAGAATGTCCATGGCAAGAAAGAAGATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTGTTGAAGAAGGATCAGACTGCACTTTTCACAATAAACTGGAAATGGTGGCTAGCAAGACTGTTTATGATCTACACTGCCTCTCACCTATAACGCCATCATTGCAATGTTCTGACCAAGGCAAGGAGGATGCTAAATCCAGAGTTATTTCTGGAAACTATCTACCATCCCCTGAATCTGATGTCAATATGTTGGCATCTTGTACAAACTACACTAAGTCTTCTGAAAATTTGCATGGCAGTGAAGCACTTCTGGACACAAATGAGATGTTGGGAAATACCCCCTATGATTCCCAAATTGAATGCAGCGATGCTGCCTTACTTCAGCTTACTCCTCTGCCTAATCCTGAGCAGTCTGGCACTTCATCATTCTCATCTGTACCAAATGAGTGTGCAAAGATTACTCACTCCAGACTCTCCCATGGATGTATTCGCCAGTTACCTGGCGGTTCTCTTCGTTGGCGTAGTTCCCCGCTTACCCCGAGCACTAGAGTAGGTGAAGCACAATATTTACAGTGTTCTGAATCAGATAGCAAGCTCTTTGACATTCTAGAAAATGAAACCCCTGATATACTGAAGGAAGCTTCAACTCCTATGACGTCTGTCAAAGTAAATTCCCCAACCCAAAAACGAGTTTCTCCTCCCCAGAGTTGTCATATTGGGATTGGATCAAGCTCCTCTGGAGGATTGAGAAGTGGCCGGAAATTTATATTGAAAGCTGTACCTACTTTCCCTTCATTGTCTCCTTGCATTAATTCCAAAAGCAATGGCGATGAGGATTCTTGTAACAGTCCGAGCAAGTCACCTCTCAAAGCTAATGAGTGCCCTCAACCAAACAGGTTGCCGGGGGTGACTTATTATGTGAACAATCAACGCGAAATTGAAGTTATGGCTGCATCTTCCTCCAATGTCTATTCCTTTACATTCTTAGCAATTTGGAATTTTAGTTTAGTAGTTTTTTCTTGGAACAGATTCTTACTCTTGTTTTTTTCTACCCTCTCGTGGTATGAAATGCTATTGCACAATCTTAAATGGCGTCTCATCCTTCAAGTTGGGCTCCACTTCGCTTTAACCGTTTAG 2949 0.4208 MDSPEPSKNNNGSSSSASTLNNNNNNDDAPSSESPQVQESPFLRFVKTLSPIPTKASHMTQGCVGLSSPPLVFKSPRISHRETQLTKRPQGTQSFGGVIPQSVNEGNRLGEAPGDSRTSNSHQSLPERFINDTQQVFDFKNDENTQYYSSPSCIDKYLVDPGDIDQMYSADQDVQQQSTDAAETSLSDQTHSKNNILNFDRKDGPGDKVEESLPLSEDFNKVHLEKAAYGEEPEKMEGEKNDVEWSSQEPAKLESILAADGFDKRYSHGPLPQWMPNPLQDVKGCEDYNEMVPTSHVTAENILQDGSEATLKHHGIRRRCLQFGEAASNALGRNVKLNAASNTMITVKPSELVTSLCPRRGSGNFPSTSPKPSGIGLHLNSIINAIPIDQAATTGVRLSDSSQGMKSTSSIRLQRMENVKRSILSSNVDGRSLVDTRTESHEIDDTVATDTGNSEDLNQPPSPCKKKKKTSVTADDNGCKRCNCKKSKCLKLYCDCFAAGTYCTDPCACQGCLNRPEYVETVVETKQQIESRNPIAFAPKIVQPTTDISSHMDDENLTTPSSARHKRGCNCKRSMCLKKYCECYQANVGCSSGCRCEGCKNVHGKKEDYVAFGHTSSKERVSSIVEEGSDCTFHNKLEMVASKTVYDLHCLSPITPSLQCSDQGKEDAKSRVISGNYLPSPESDVNMLASCTNYTKSSENLHGSEALLDTNEMLGNTPYDSQIECSDAALLQLTPLPNPEQSGTSSFSSVPNECAKITHSRLSHGCIRQLPGGSLRWRSSPLTPSTRVGEAQYLQCSESDSKLFDILENETPDILKEASTPMTSVKVNSPTQKRVSPPQSCHIGIGSSSSGGLRSGRKFILKAVPTFPSLSPCINSKSNGDEDSCNSPSKSPLKANECPQPNRLPGVTYYVNNQREIEVMAASSSNVYSFTFLAIWNFSLVVFSWNRFLLLFFSTLSWYEMLLHNLKWRLILQVGLHFALTV 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01980 982 MobiDBLite consensus disorder prediction 450 466 - -
Gma17g01980 982 MobiDBLite consensus disorder prediction 113 132 - -
Gma17g01980 982 MobiDBLite consensus disorder prediction 823 853 - -
Gma17g01980 982 MobiDBLite consensus disorder prediction 172 215 - -
Gma17g01980 982 MobiDBLite consensus disorder prediction 874 896 - -
Gma17g01980 982 MobiDBLite consensus disorder prediction 874 899 - -
Gma17g01980 982 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 1 882 - -
Gma17g01980 982 MobiDBLite consensus disorder prediction 1 43 - -
Gma17g01980 982 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 882 IPR044522 GO:0003700
Gma17g01980 982 MobiDBLite consensus disorder prediction 434 470 - -
Gma17g01980 982 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 480 515 IPR005172 -
Gma17g01980 982 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 567 601 IPR005172 -
Gma17g01980 982 MobiDBLite consensus disorder prediction 434 448 - -
Gma17g01980 982 SMART CXC_2 477 518 IPR033467 -
Gma17g01980 982 SMART CXC_2 564 605 IPR033467 -
Gma17g01980 982 MobiDBLite consensus disorder prediction 172 194 - -
Gma17g01980 982 MobiDBLite consensus disorder prediction 1 132 - -
Gma17g01980 982 ProSiteProfiles CRC domain profile. 478 604 IPR005172 -
Gma17g01980 982 MobiDBLite consensus disorder prediction 85 101 - -
Gma17g01980 982 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01980 Gma-Chr17 35406071 35412670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01980 297 607 CPP Transcription Factor Family AT3G22760 40.190 1.74e-59 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gma17g01980 TCR 4.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01980 K21776 - gmx:547664 1748.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01980 17 35406071 35412670 Gma17g01980 17 35406071 35412670 ECH
Gma14g01105 14 15544992 15551060 Gma17g01980 17 35406071 35412670 ECH
Gma17g01980 17 35406071 35412670 Gma14g01105 14 15544992 15551060 GST
Gma17g01980 17 35406071 35412670 Gma04g02101 04 51496579 51499049 PCT
Gma17g01980 17 35406071 35412670 Gma06g01312 06 12308308 12311836 PCT