Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01973 ATGAAGATGTTTGGAATGTGTGGTGGTAGCGACGATGATAATCACAGAGATGATGAAGACAAAAGCCCGATTGGGGCAAGAGAAGATGGCAGCCAATACAGCCTCACAGGAGTTCTTCTTCCGTCTCTCGGGGCCACAGCTATTCGCAATGGCAGCGGTAGACCAAAGTTTCGCCAATACATTGTCTCACCATATAATCGTCATTACAAACTATGGAACACGTTTCTTCTGATATTGGTTTTCTACACTGCTTGGATGTGTCCATTTGAATTTGGTTTCCTTGAGAAATCAAATATTGCAGTGGCTATAACGGACAATGTTGTAAATGTGTTTTTTGCCATCGACATCGTGCTCACATTCTTCGTTGCCTACCTTGATAAGTCAACATATTTGCTAGTTGATGACCACAAACTCATTGCTTTGAGATATGCTAAATCCTGGTTGATCTTGGATGTCATTGCAACCATACCTTATGAAGTTGTTATTTTAATTTTGCCACCTTCTCTTCAGATATATAGTTACTTCAATTTTCTTCGCCTTTGGCGCCTCCATCGAGTGAGTGCCATGTTTGCAAGATTAGAAAAGGACAGGAACTATAACTACTTTTTGGTGCGTTGTTGCAAGCTTACATGTGTTACTTTATTCTCAGTGCATGCTGCTGCATGCTTTTTCTATTTTCTTGCTGCACGGGATAATCCAGAATCTACATGGCTTGGACTTGTTCCTGATGCCATTGACCAGAATCTATGGGGAAAGTATGTAGTAGCAATATATTGGTCCATAGTGACCCTTGTATCAGTTGGTTATGGTGATCTACATCCTGTAAATACAAAAGAAATGGTATTTGACATTTTTTATATGCTCTTTAATCTTGGACTCACCTCATATCTGATAGGCAACATGACCAATATGGTAGTCCACTGGACAGAAAGAACTAAGAGATATAGAGACACTGTCCAATCTGCCTCAAATTTTGCCCATAGGAACCACCTGCCAAATCGTTTGCAAGAACAAATATTTGCTCATTTGCTTATGAAGTACAGAACTGATTTAGAAGGACTACAACAGCAAGAGATCATTGATTCTCTTCCAAAAGCCATTCATTCTAGCATCTCACACTACCTATTCTTTTCACTTGTTGACAAAGTGTACTTGTTTCATGGAGTATCAAATGACCTACTTTTTCAACTGGTCACAGAGATGAAGGCTGAGTATTTTCCTCCGAAGGATGATGTGATTTTGCAAAATGAAGCACCAACAGACTTCTATATATTCGTTACAGGAGCTGCAGTAAGATATTATATTCCTCTTTATTTTTATTTACAATTATATTGTATTGTTGTTGGCGAGGCAAAGTCTGGAGATGTAGTTGGGGAAATAGGAGTGTTATGCTATAGGCCACAATTGTTTACGGTTCGAACCAAGCGGTTGAGCCAGATCTTGCGTTTGAGTCGAACCTCATTTCTGAATCTTTCTCATTCAAATGTTGAAGATGGAACAATGATCATGAACAATTTTCTTCAAAATTTACATGAATCAGAGGATCCACTGATGAAAGAAATTTTGGCAGAAACAGAAGCAATGTTAGCCAGAGGAAAAATGGATTTGCCTATTAGTTTATTGTTTGCAGCTAGCAGAGGTGATGATATATTGTTGCATCAACTGCTAAAGAAGGGTTCAGATCCAAATGAACCAGATAAGGATGGAAAGACAGCATTGCATATTGCAGCTTCCAAAGGCAAAGACCATTGTGTAGCTTTGCTTCTAGAACATGGGGCTAATCCCAACATCAAAGACTTAGATGGAAATGTCCCGCTATGGGAAGCAATCAAGGGTGGGCATGATTCTGTGATGAAGCTTCTTATAGACAATGGTGCAGACATATCATCTGGCGATGTAGGTTCTCTTGCATGCATTTCTGTTGCGCAAAATAACTTAGAATTACTCAAGGATATTGTTCAATGTGGAGGAGACGTGACACGGTCCGCAAGCAACGGAAGCACAGCACTCCATGCTGCAGTGTGTGAAGGAAATGCTGAAATAGTGAAGTTCCTTCTAGAGCATGGAGCAGACATTGATAAGCAAGATGATAGTGGCTTGACTCCAAGGATTTTAGCAGATCAACAATGCCACGAAGAAATAATAAACATATTCAAGAAAGTTGGACAAAACAAAGCACCACATGGTATTCCTACAACGTCCTTTGTTGCAAGGTGTCAAAGTAAACCCACTATACTAGGCATTCATCAAGGAAGCAAGCCACCTAATGAAGAAGTGACATGGTTTGATAATCATCAAAGAAGAAAGATGAGCCCTTTCCACAATTCCTTTTTTGGGATAATGTCAACGGAAAATTATGATAAAAAAGATTCCACATCTTCATCTAAAACCAGTCACACTAGTAGGGAAGAATTACCAGCCAGAGTAACTCTTAGTTGTCCAGAGAAAGGTGAACATGGCAAAAAGCTTGTTTTTCTGCCAAAATCCCTTGAAGAATTACTACGTATTGGTGCTGAAAAGTTTGATTTCTCTCCCACCAAAATATTGAGCAAAGAAAGAGCTGAAATTGAAGACATATATGTTATAAGAGATGGTGATCTTCTTATTCTTGAATAG 2616 0.3922 MKMFGMCGGSDDDNHRDDEDKSPIGAREDGSQYSLTGVLLPSLGATAIRNGSGRPKFRQYIVSPYNRHYKLWNTFLLILVFYTAWMCPFEFGFLEKSNIAVAITDNVVNVFFAIDIVLTFFVAYLDKSTYLLVDDHKLIALRYAKSWLILDVIATIPYEVVILILPPSLQIYSYFNFLRLWRLHRVSAMFARLEKDRNYNYFLVRCCKLTCVTLFSVHAAACFFYFLAARDNPESTWLGLVPDAIDQNLWGKYVVAIYWSIVTLVSVGYGDLHPVNTKEMVFDIFYMLFNLGLTSYLIGNMTNMVVHWTERTKRYRDTVQSASNFAHRNHLPNRLQEQIFAHLLMKYRTDLEGLQQQEIIDSLPKAIHSSISHYLFFSLVDKVYLFHGVSNDLLFQLVTEMKAEYFPPKDDVILQNEAPTDFYIFVTGAAVRYYIPLYFYLQLYCIVVGEAKSGDVVGEIGVLCYRPQLFTVRTKRLSQILRLSRTSFLNLSHSNVEDGTMIMNNFLQNLHESEDPLMKEILAETEAMLARGKMDLPISLLFAASRGDDILLHQLLKKGSDPNEPDKDGKTALHIAASKGKDHCVALLLEHGANPNIKDLDGNVPLWEAIKGGHDSVMKLLIDNGADISSGDVGSLACISVAQNNLELLKDIVQCGGDVTRSASNGSTALHAAVCEGNAEIVKFLLEHGADIDKQDDSGLTPRILADQQCHEEIINIFKKVGQNKAPHGIPTTSFVARCQSKPTILGIHQGSKPPNEEVTWFDNHQRRKMSPFHNSFFGIMSTENYDKKDSTSSSKTSHTSREELPARVTLSCPEKGEHGKKLVFLPKSLEELLRIGAEKFDFSPTKILSKERAEIEDIYVIRDGDLLILE 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01973 871 PRINTS Ankyrin repeat signature 569 584 IPR002110 GO:0005515
Gma17g01973 871 PRINTS Ankyrin repeat signature 681 695 IPR002110 GO:0005515
Gma17g01973 871 ProSiteProfiles Ankyrin repeat region circular profile. 665 697 - -
Gma17g01973 871 SMART cnmp_10 385 507 IPR000595 -
Gma17g01973 871 PANTHER POTASSIUM CHANNEL AKT1 4 871 IPR045319 GO:0005249|GO:0006813
Gma17g01973 871 MobiDBLite consensus disorder prediction 9 26 - -
Gma17g01973 871 Gene3D Jelly Rolls 351 515 IPR014710 -
Gma17g01973 871 Pfam KHA, dimerisation domain of potassium ion channel 808 870 IPR021789 -
Gma17g01973 871 ProSiteProfiles Ankyrin repeat profile. 601 633 IPR002110 GO:0005515
Gma17g01973 871 Pfam Ion transport protein 70 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gma17g01973 871 Pfam Cyclic nucleotide-binding domain 405 493 IPR000595 -
Gma17g01973 871 Gene3D - 72 306 - -
Gma17g01973 871 MobiDBLite consensus disorder prediction 787 806 - -
Gma17g01973 871 ProSiteProfiles cAMP/cGMP binding motif profile. 385 509 IPR000595 -
Gma17g01973 871 Pfam Ankyrin repeats (3 copies) 540 630 IPR002110 GO:0005515
Gma17g01973 871 Pfam Ankyrin repeats (3 copies) 641 718 IPR002110 GO:0005515
Gma17g01973 871 ProSiteProfiles Ankyrin repeat region circular profile. 568 599 - -
Gma17g01973 871 SUPERFAMILY Voltage-gated potassium channels 64 306 - -
Gma17g01973 871 PRINTS EAG/ELK/ERG potassium channel family signature 82 89 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma17g01973 871 PRINTS EAG/ELK/ERG potassium channel family signature 116 125 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma17g01973 871 PRINTS EAG/ELK/ERG potassium channel family signature 279 290 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma17g01973 871 PRINTS EAG/ELK/ERG potassium channel family signature 297 306 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma17g01973 871 PRINTS EAG/ELK/ERG potassium channel family signature 253 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma17g01973 871 PRINTS EAG/ELK/ERG potassium channel family signature 105 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma17g01973 871 SUPERFAMILY Ankyrin repeat 538 721 IPR036770 -
Gma17g01973 871 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 4 871 - -
Gma17g01973 871 SMART ANK_2a 568 597 IPR002110 GO:0005515
Gma17g01973 871 SMART ANK_2a 601 630 IPR002110 GO:0005515
Gma17g01973 871 SMART ANK_2a 535 564 IPR002110 GO:0005515
Gma17g01973 871 SMART ANK_2a 665 694 IPR002110 GO:0005515
Gma17g01973 871 SMART ANK_2a 632 661 IPR002110 GO:0005515
Gma17g01973 871 ProSiteProfiles Ankyrin repeat profile. 568 600 IPR002110 GO:0005515
Gma17g01973 871 MobiDBLite consensus disorder prediction 789 803 - -
Gma17g01973 871 ProSiteProfiles KHA domain profile. 808 871 IPR021789 -
Gma17g01973 871 Gene3D - 537 720 IPR036770 -
Gma17g01973 871 ProSiteProfiles Ankyrin repeat profile. 665 697 IPR002110 GO:0005515
Gma17g01973 871 CDD CAP_ED 385 503 IPR000595 -
Gma17g01973 871 MobiDBLite consensus disorder prediction 1 29 - -
Gma17g01973 871 ProSiteProfiles Ankyrin repeat region circular profile. 601 632 - -
Gma17g01973 871 SUPERFAMILY cAMP-binding domain-like 310 510 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01973 Gma-Chr17 35236166 35243744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01973 31 870 Ion Channels AT4G32500 57.864 0.0 955
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01973 K21867 - gmx:100809960 1700.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01973 17 35236166 35243744 Gma17g01973 17 35236166 35243744 ECH
Gma17g01973 17 35236166 35243744 Gma14g01118 14 16470619 16482347 GST
Gma17g01973 17 35236166 35243744 Gma04g00640 04 5872125 5878577 PCT
Gma17g01973 17 35236166 35243744 Gma06g00630 06 5693687 5699308 PCT
Gma04g00640 04 5872125 5878577 Gma17g01973 17 35236166 35243744 PCT
Gma06g00630 06 5693687 5699308 Gma17g01973 17 35236166 35243744 PCT