Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma17g01958 | ATGGACTTCGTTTGCCCTATTGGCTTTCACTGTGCCACTGAAATCTCTGCTCTTCTTACTCTTCCTTCACCTCTTCAAGTTCAGGTAATCTCTTCATTCATATTATACACCTTTCTTAACCCTTTTCATTATGCTCTTTTCACTCTTGAGGAAGATTATCACAACCTTTTGTCTGCAAGAGGGTGCAATGGTATCACTGTCAAACAGGATGGCAACTCTGGAAAAGGGTTCTCAACGGGATACAGCTGCGCTAGGCAATTGAAAATTGATGCAACGTGCAAAGATTCATGGGTTGGATTCTCGGGTAGGTGGAGTAGCAAAGGCAAGTTCATCCTTATCTTGGTCATGTTCTTTGGGAGGCTCAAGAAATTCAACATGAAAGGTGGCAAAGCATGGAAGCTCTCCTGGCCAGTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAATGGTTTCCAAAAGGATCTCTTGAACCCAAAAAGTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGAAGGAGATGAAACCAAAGATGTCTTGGTTGAGTTTTATGCACCTTGGTGTGGACATTGCAAAAGTCTTGCTCCTACTTACGAGAAAGTTGCCACAACATTTAAATTGGAGGAAGATGTAGTAATTGCAAATTTGGATGCTGATAAATATAAGGATCTGGCTGAAAAGTGA | 729 | 0.4225 | MDFVCPIGFHCATEISALLTLPSPLQVQVISSFILYTFLNPFHYALFTLEEDYHNLLSARGCNGITVKQDGNSGKGFSTGYSCARQLKIDATCKDSWVGFSGRWSSKGKFILILVMFFGRLKKFNMKGGKAWKLSWPVDCDEHKSLCSKYGVSGYPTIQWFPKGSLEPKKYEGPRTADSLAEFVNTEGDETKDVLVEFYAPWCGHCKSLAPTYEKVATTFKLEEDVVIANLDADKYKDLAEK | 242 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma17g01958 | 242 | SUPERFAMILY | Thioredoxin-like | 191 | 241 | IPR036249 | - | |
| Gma17g01958 | 242 | PANTHER | PROTEIN DISULFIDE ISOMERASE-LIKE 2-1 | 189 | 242 | - | - | |
| Gma17g01958 | 242 | PANTHER | PROTEIN DISULFIDE ISOMERASE-LIKE 2-1 | 138 | 187 | - | - | |
| Gma17g01958 | 242 | Pfam | Thioredoxin | 190 | 242 | IPR013766 | - | |
| Gma17g01958 | 242 | Pfam | Thioredoxin | 138 | 185 | IPR013766 | - | |
| Gma17g01958 | 242 | PANTHER | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED | 189 | 242 | - | - | |
| Gma17g01958 | 242 | PANTHER | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED | 138 | 187 | - | - | |
| Gma17g01958 | 242 | ProSitePatterns | Thioredoxin family active site. | 195 | 213 | IPR017937 | - | |
| Gma17g01958 | 242 | Gene3D | Glutaredoxin | 122 | 185 | - | - | |
| Gma17g01958 | 242 | ProSiteProfiles | Thioredoxin domain profile. | 155 | 242 | IPR013766 | - | |
| Gma17g01958 | 242 | Gene3D | Glutaredoxin | 186 | 242 | - | - | |
| Gma17g01958 | 242 | SUPERFAMILY | Thioredoxin-like | 137 | 186 | IPR036249 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma17g01958 | Gma-Chr17 | 34962608 | 34964796 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma17g01958 | 76 | 134 | Inorganic Solute Cotransporters | AT4G10310 | 60.000 | 1.71e-18 | 82.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma17g01958 | K09584 | - | gmx:100037471 | 208.764 |