Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01949 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCACGATTACTTAGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGCAAAGTGTCCTCGGACCCTGTTGCTATTGATGCACCTGGAGGATTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCTAGGACAAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACCCAGTTAATTAAGGCGAGAGagcaacagcagcagcaacagcaacagcaacagcaacagcaacaagggcagcagcagccacaacctcagaagttgcaacatcaacaacagcagcagcaacaacaacacatgcagatgcaacaaatcctattacaaagggctcagcagcagcagcagcagcaacaacaacagcagcagcagcagcagcaaccacaacaacagcagcagcagcagcaaccacaacagcagcatcagcagcagcagcaaccacaacagcagGGTAGGGATAGGGCTCATCTCTTAAATGGTGGTACGAATGGGTTAGTTGGAAACCCTAGCACAGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGGTTAAAATTGCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGACCAAATCTTAGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACCGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGATCTACTCCGGATATAAAGAGTGAGATCAATCCTGTTTTAAATCCCAGAGCTGCCGGCCCTGAAGGATCATTGATAGCAATGCCTGGTTCGAATCAAGGTAGCAACAATTTGACTCTGAAAGGATGGCCACTCACAGGCTTGGAGCAACTACGTTCTGGTCTACTCCAGCAACAGAAACCTCCTTTCATACAGTCTCCTCAGCAATTTCATCAACTTCCAATGTTGACACCACAACATCAGCAACAGTTAATGCTAGCACAACAAAATTTGGCATCTCCATCTGCCAGTGATGATAGTAGAAGAATCAGAATGCTGCTGAATAATAGGAATATGGGTGTAACTAAGGATGGTCTTTCAAACCCTGTTGGTGATATAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCCGCTTTTCCACGCAGTGATACAGATATGCTAATGAAGTTGAAACTGGCGCAATTACAACATCAGCAACAGCAGAATGCCAATCCACCACAGCAGCAACTGCAACAGCATACTCTTTCGAATCAGCAATCTCAGACATCAAATCATAGCATGCATCAGCAAGATAAAATGGGAGGAGGTGGTGGTAGTAGTGTCAATGTGGATGGTAGCATGTCAAATTCCTTTAGAGGAAATGATCAGGTTTCCAAAAATCAGACTGGGAGAAAGAGAAAGCAACCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCACCCTCAACTCCCTCAACACATACACCTGGTGATGTGATGTCAATGCCTGTTTTACCTCATAGTGGTAGCTCTTCAAAGCCATTAATGATGTTTAGTGCTGATGGCGCTGGAACTCTGACATCACCTTCAAACCAATTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCCCCTGATGATACAGACCTTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAATAAATTCTGTACGTGCAAGCACTACCAAAGTTGGCTGTTGCCATTTTTCATCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTGTGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCATGCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCACATGACAAAACTGTCAGAGTTTGGGATGTTGAAAATCCTGGATATTCGCTTCGTACCTTTACGGGACATTCTTCACCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGCTGATGGTGAGATACGATATTGGAGCATTAACAATGGCAATTGTGCTAGAGTCTCGAAGGGTGGCGCTGTTCAGATGAGATTTCAACCTCGCCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACACAAGCATCTCGATATTCACTAAAGGGACATACAAAATCAATACGTTCTGTGTGTTGGGATCCTTCTGGGGAGTTTCTGGCATCTGTCAGTGAGGACTCTGTCAGAGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGTAATGGCAACAAGTTTCACTCATGTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACACTATCTGCTCATGAAGGTCTTATTGCGGCATTGGCGGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2739 0.3987 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQKLQHQQQQQQQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQILDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTPQHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGGPAFPRSDTDMLMKLKLAQLQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMGGGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENPGYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQMRFQPRLGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01949 912 SUPERFAMILY WD40 repeat-like 622 912 IPR036322 GO:0005515
Gma17g01949 912 MobiDBLite consensus disorder prediction 428 551 - -
Gma17g01949 912 MobiDBLite consensus disorder prediction 155 193 - -
Gma17g01949 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 628 659 IPR001680 GO:0005515
Gma17g01949 912 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 912 IPR044716 GO:0003714
Gma17g01949 912 SMART WD40_4 788 826 IPR001680 GO:0005515
Gma17g01949 912 SMART WD40_4 832 871 IPR001680 GO:0005515
Gma17g01949 912 SMART WD40_4 706 746 IPR001680 GO:0005515
Gma17g01949 912 SMART WD40_4 621 660 IPR001680 GO:0005515
Gma17g01949 912 SMART WD40_4 873 912 IPR001680 GO:0005515
Gma17g01949 912 SMART WD40_4 663 702 IPR001680 GO:0005515
Gma17g01949 912 CDD WD40 624 912 - -
Gma17g01949 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 713 751 - -
Gma17g01949 912 Pfam WD domain, G-beta repeat 793 825 IPR001680 GO:0005515
Gma17g01949 912 Pfam WD domain, G-beta repeat 875 912 IPR001680 GO:0005515
Gma17g01949 912 Pfam WD domain, G-beta repeat 709 746 IPR001680 GO:0005515
Gma17g01949 912 Pfam WD domain, G-beta repeat 633 659 IPR001680 GO:0005515
Gma17g01949 912 Pfam WD domain, G-beta repeat 667 702 IPR001680 GO:0005515
Gma17g01949 912 Coils Coil 86 106 - -
Gma17g01949 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 880 912 IPR001680 GO:0005515
Gma17g01949 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 795 835 IPR001680 GO:0005515
Gma17g01949 912 Pfam LisH 10 36 IPR006594 GO:0005515
Gma17g01949 912 MobiDBLite consensus disorder prediction 261 277 - -
Gma17g01949 912 Gene3D - 600 757 IPR015943 GO:0005515
Gma17g01949 912 ProSitePatterns Trp-Asp (WD) repeats signature. 689 703 IPR019775 -
Gma17g01949 912 Gene3D - 758 912 IPR015943 GO:0005515
Gma17g01949 912 SMART Lish 8 40 IPR006594 GO:0005515
Gma17g01949 912 MobiDBLite consensus disorder prediction 428 534 - -
Gma17g01949 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 670 705 - -
Gma17g01949 912 MobiDBLite consensus disorder prediction 243 277 - -
Gma17g01949 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 880 912 - -
Gma17g01949 912 Coils Coil 124 147 - -
Gma17g01949 912 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gma17g01949 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 705 IPR001680 GO:0005515
Gma17g01949 912 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 912 - -
Gma17g01949 912 MobiDBLite consensus disorder prediction 155 179 - -
Gma17g01949 912 MobiDBLite consensus disorder prediction 98 119 - -
Gma17g01949 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 713 755 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01949 Gma-Chr17 34669150 34680301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01949 632 827 U-box Gene Family AT2G33340 31.884 2.31e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gma17g01949 WD40 0.082 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01949 - - gmx:100809084 1535.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01949 17 34669150 34680301 Gma14g01138 14 17591451 17606957 GST
Gma17g01949 17 34669150 34680301 Gma04g00647 04 5969900 5979801 PCT
Gma17g01949 17 34669150 34680301 Gma06g00640 06 5793117 5806172 PCT
Gma04g00647 04 5969900 5979801 Gma17g01949 17 34669150 34680301 PCT
Gma06g00640 06 5793117 5806172 Gma17g01949 17 34669150 34680301 PCT